Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00129

Experiment: PYE with Benzethonium chloride 0.001 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00128 and CCNA_00129 are separated by 82 nucleotidesCCNA_00129 and CCNA_00130 are separated by 3 nucleotides CCNA_00128: CCNA_00128 - argininosuccinate synthase, at 137,246 to 138,472 _00128 CCNA_00129: CCNA_00129 - hypothetical protein, at 138,555 to 138,917 _00129 CCNA_00130: CCNA_00130 - Kup system potassium uptake protein, at 138,921 to 140,918 _00130 Position (kb) 138 139Strain fitness (log2 ratio) -1 0 1 2at 138.542 kb on - strandat 138.578 kb on - strandat 138.589 kb on + strandat 138.592 kb on + strand, within CCNA_00129at 138.609 kb on - strand, within CCNA_00129at 138.626 kb on - strand, within CCNA_00129at 138.636 kb on - strand, within CCNA_00129at 138.659 kb on - strand, within CCNA_00129at 138.701 kb on + strand, within CCNA_00129at 138.709 kb on - strand, within CCNA_00129at 138.747 kb on - strand, within CCNA_00129at 138.765 kb on - strand, within CCNA_00129at 138.821 kb on - strand, within CCNA_00129at 138.872 kb on - strand, within CCNA_00129at 138.895 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Benzethonium chloride 0.001 mM
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138,542 - +1.8
138,578 - +1.8
138,589 + +0.6
138,592 + CCNA_00129 0.10 -0.3
138,609 - CCNA_00129 0.15 +0.5
138,626 - CCNA_00129 0.20 +1.6
138,636 - CCNA_00129 0.22 +0.6
138,659 - CCNA_00129 0.29 +1.3
138,701 + CCNA_00129 0.40 +0.2
138,709 - CCNA_00129 0.42 +2.0
138,747 - CCNA_00129 0.53 +2.1
138,765 - CCNA_00129 0.58 +1.2
138,821 - CCNA_00129 0.73 +1.8
138,872 - CCNA_00129 0.87 +1.4
138,895 + -1.2

Or see this region's nucleotide sequence