Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00033

Experiment: PYE with Benzethonium chloride 0.001 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00032 and CCNA_03912 are separated by 105 nucleotidesCCNA_03912 and CCNA_00033 are separated by 156 nucleotidesCCNA_00033 and CCNA_00034 are separated by 248 nucleotidesCCNA_00034 and CCNA_00035 are separated by 14 nucleotides CCNA_00032: CCNA_00032 - antitoxin protein VapB, at 34,699 to 34,941 _00032 CCNA_03912: CCNA_03912 - hypothetical protein, at 35,047 to 35,667 _03912 CCNA_00033: CCNA_00033 - polyribonucleotide nucleotidyltransferase/polynucleotide adenylyltransferase, at 35,824 to 37,962 _00033 CCNA_00034: CCNA_00034 - SSU ribosomal protein S15P, at 38,211 to 38,480 _00034 CCNA_00035: CCNA_00035 - tRNA pseudouridine synthase B, at 38,495 to 39,427 _00035 Position (kb) 35 36 37 38Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 34.824 kb on - strand, within CCNA_00032at 34.824 kb on - strand, within CCNA_00032at 34.824 kb on - strand, within CCNA_00032at 34.824 kb on - strand, within CCNA_00032at 34.856 kb on - strand, within CCNA_00032at 34.867 kb on + strand, within CCNA_00032at 34.992 kb on - strandat 35.019 kb on + strandat 35.026 kb on + strandat 35.055 kb on + strandat 35.055 kb on + strandat 35.151 kb on + strand, within CCNA_03912at 35.174 kb on - strand, within CCNA_03912at 35.189 kb on - strand, within CCNA_03912at 35.265 kb on - strand, within CCNA_03912at 35.279 kb on + strand, within CCNA_03912at 35.282 kb on - strand, within CCNA_03912at 35.300 kb on + strand, within CCNA_03912at 35.353 kb on + strand, within CCNA_03912at 35.361 kb on - strand, within CCNA_03912at 35.361 kb on - strand, within CCNA_03912at 35.397 kb on - strand, within CCNA_03912at 35.425 kb on + strand, within CCNA_03912at 35.425 kb on + strand, within CCNA_03912at 35.487 kb on + strand, within CCNA_03912at 35.491 kb on - strand, within CCNA_03912at 35.501 kb on + strand, within CCNA_03912at 35.514 kb on - strand, within CCNA_03912at 35.535 kb on + strand, within CCNA_03912at 35.558 kb on + strand, within CCNA_03912at 35.558 kb on + strand, within CCNA_03912at 35.585 kb on + strand, within CCNA_03912at 35.592 kb on + strand, within CCNA_03912at 35.593 kb on + strand, within CCNA_03912at 35.604 kb on + strand, within CCNA_03912at 35.612 kb on - strandat 35.612 kb on - strandat 35.623 kb on - strandat 35.639 kb on + strandat 35.658 kb on - strandat 35.661 kb on + strandat 35.669 kb on - strandat 35.741 kb on - strandat 35.822 kb on + strandat 35.830 kb on - strandat 35.830 kb on - strandat 35.854 kb on + strandat 36.125 kb on - strand, within CCNA_00033at 38.012 kb on - strandat 38.036 kb on - strandat 38.050 kb on - strandat 38.050 kb on - strandat 38.050 kb on - strandat 38.050 kb on - strandat 38.050 kb on - strandat 38.064 kb on + strandat 38.064 kb on + strandat 38.072 kb on - strandat 38.072 kb on - strandat 38.080 kb on + strandat 38.080 kb on + strandat 38.080 kb on + strandat 38.088 kb on - strandat 38.088 kb on - strandat 38.125 kb on + strandat 38.815 kb on + strand, within CCNA_00035at 38.823 kb on - strand, within CCNA_00035at 38.823 kb on - strand, within CCNA_00035at 38.867 kb on - strand, within CCNA_00035at 38.870 kb on + strand, within CCNA_00035at 38.871 kb on + strand, within CCNA_00035at 38.890 kb on + strand, within CCNA_00035at 38.916 kb on - strand, within CCNA_00035at 38.942 kb on - strand, within CCNA_00035at 38.949 kb on + strand, within CCNA_00035at 38.953 kb on - strand, within CCNA_00035

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Benzethonium chloride 0.001 mM
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34,824 - CCNA_00032 0.51 +2.1
34,824 - CCNA_00032 0.51 +1.4
34,824 - CCNA_00032 0.51 +2.5
34,824 - CCNA_00032 0.51 +1.5
34,856 - CCNA_00032 0.65 +1.7
34,867 + CCNA_00032 0.69 -1.1
34,992 - +0.1
35,019 + -0.9
35,026 + -2.9
35,055 + -1.8
35,055 + -2.1
35,151 + CCNA_03912 0.17 -0.8
35,174 - CCNA_03912 0.20 +0.4
35,189 - CCNA_03912 0.23 -0.3
35,265 - CCNA_03912 0.35 +0.3
35,279 + CCNA_03912 0.37 -1.7
35,282 - CCNA_03912 0.38 -0.4
35,300 + CCNA_03912 0.41 +0.1
35,353 + CCNA_03912 0.49 -0.4
35,361 - CCNA_03912 0.51 -1.4
35,361 - CCNA_03912 0.51 +0.5
35,397 - CCNA_03912 0.56 -0.8
35,425 + CCNA_03912 0.61 +0.6
35,425 + CCNA_03912 0.61 -1.7
35,487 + CCNA_03912 0.71 +1.2
35,491 - CCNA_03912 0.71 -0.5
35,501 + CCNA_03912 0.73 -1.1
35,514 - CCNA_03912 0.75 -1.7
35,535 + CCNA_03912 0.79 -0.5
35,558 + CCNA_03912 0.82 +1.9
35,558 + CCNA_03912 0.82 -0.4
35,585 + CCNA_03912 0.87 -0.7
35,592 + CCNA_03912 0.88 +0.5
35,593 + CCNA_03912 0.88 -0.7
35,604 + CCNA_03912 0.90 +2.3
35,612 - +1.9
35,612 - +0.9
35,623 - +1.0
35,639 + +0.5
35,658 - -0.3
35,661 + -0.9
35,669 - +1.2
35,741 - -0.1
35,822 + -0.4
35,830 - +2.8
35,830 - +2.8
35,854 + +1.0
36,125 - CCNA_00033 0.14 +3.0
38,012 - +2.5
38,036 - +2.1
38,050 - +2.0
38,050 - +1.9
38,050 - +1.6
38,050 - +1.6
38,050 - +1.5
38,064 + +0.2
38,064 + +2.5
38,072 - +2.7
38,072 - +1.7
38,080 + -0.4
38,080 + +0.0
38,080 + +0.7
38,088 - +1.8
38,088 - +1.9
38,125 + +0.8
38,815 + CCNA_00035 0.34 -0.7
38,823 - CCNA_00035 0.35 +1.3
38,823 - CCNA_00035 0.35 +1.4
38,867 - CCNA_00035 0.40 +1.3
38,870 + CCNA_00035 0.40 +0.3
38,871 + CCNA_00035 0.40 -2.7
38,890 + CCNA_00035 0.42 -0.4
38,916 - CCNA_00035 0.45 +1.4
38,942 - CCNA_00035 0.48 +1.3
38,949 + CCNA_00035 0.49 +0.3
38,953 - CCNA_00035 0.49 +1.5

Or see this region's nucleotide sequence