Experiment: Agro_defined_trehalose 1x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS20400 and CA265_RS20405 are separated by 2 nucleotides CA265_RS20405 and CA265_RS20410 are separated by 97 nucleotides CA265_RS20410 and CA265_RS20415 are separated by 65 nucleotides
CA265_RS20400: CA265_RS20400 - hypothetical protein, at 5,043,105 to 5,044,109
_RS20400
CA265_RS20405: CA265_RS20405 - hypothetical protein, at 5,044,112 to 5,044,843
_RS20405
CA265_RS20410: CA265_RS20410 - hypothetical protein, at 5,044,941 to 5,045,930
_RS20410
CA265_RS20415: CA265_RS20415 - hypothetical protein, at 5,045,996 to 5,048,419
_RS20415
Position (kb) 5044
5045
5046 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5044.025 kb on - strand at 5044.058 kb on - strand at 5044.107 kb on + strand at 5044.153 kb on + strand at 5044.154 kb on - strand at 5044.172 kb on + strand at 5044.203 kb on + strand, within CA265_RS20405 at 5044.204 kb on - strand, within CA265_RS20405 at 5044.204 kb on - strand, within CA265_RS20405 at 5044.312 kb on + strand, within CA265_RS20405 at 5044.312 kb on + strand, within CA265_RS20405 at 5044.312 kb on + strand, within CA265_RS20405 at 5044.443 kb on + strand, within CA265_RS20405 at 5044.446 kb on - strand, within CA265_RS20405 at 5044.446 kb on - strand, within CA265_RS20405 at 5044.500 kb on + strand, within CA265_RS20405 at 5044.500 kb on + strand, within CA265_RS20405 at 5044.500 kb on + strand, within CA265_RS20405 at 5044.501 kb on - strand, within CA265_RS20405 at 5044.504 kb on + strand, within CA265_RS20405 at 5044.520 kb on + strand, within CA265_RS20405 at 5044.525 kb on + strand, within CA265_RS20405 at 5044.600 kb on + strand, within CA265_RS20405 at 5044.601 kb on - strand, within CA265_RS20405 at 5044.644 kb on + strand, within CA265_RS20405 at 5044.645 kb on - strand, within CA265_RS20405 at 5044.676 kb on + strand, within CA265_RS20405 at 5044.696 kb on + strand, within CA265_RS20405 at 5044.730 kb on - strand, within CA265_RS20405 at 5044.760 kb on - strand, within CA265_RS20405 at 5044.784 kb on + strand at 5044.813 kb on + strand at 5044.813 kb on + strand at 5044.926 kb on + strand at 5044.957 kb on - strand at 5044.970 kb on + strand at 5044.975 kb on - strand at 5044.975 kb on - strand at 5044.977 kb on + strand at 5044.978 kb on - strand at 5044.980 kb on - strand at 5044.980 kb on - strand at 5044.980 kb on - strand at 5045.046 kb on + strand, within CA265_RS20410 at 5045.047 kb on - strand, within CA265_RS20410 at 5045.100 kb on + strand, within CA265_RS20410 at 5045.100 kb on + strand, within CA265_RS20410 at 5045.194 kb on + strand, within CA265_RS20410 at 5045.194 kb on + strand, within CA265_RS20410 at 5045.261 kb on + strand, within CA265_RS20410 at 5045.262 kb on - strand, within CA265_RS20410 at 5045.262 kb on - strand, within CA265_RS20410 at 5045.262 kb on - strand, within CA265_RS20410 at 5045.268 kb on + strand, within CA265_RS20410 at 5045.268 kb on + strand, within CA265_RS20410 at 5045.268 kb on + strand, within CA265_RS20410 at 5045.354 kb on + strand, within CA265_RS20410 at 5045.363 kb on - strand, within CA265_RS20410 at 5045.425 kb on + strand, within CA265_RS20410 at 5045.477 kb on - strand, within CA265_RS20410 at 5045.483 kb on + strand, within CA265_RS20410 at 5045.534 kb on + strand, within CA265_RS20410 at 5045.534 kb on + strand, within CA265_RS20410 at 5045.534 kb on + strand, within CA265_RS20410 at 5045.535 kb on - strand, within CA265_RS20410 at 5045.535 kb on - strand, within CA265_RS20410 at 5045.633 kb on + strand, within CA265_RS20410 at 5045.633 kb on + strand, within CA265_RS20410 at 5045.634 kb on - strand, within CA265_RS20410 at 5045.638 kb on - strand, within CA265_RS20410 at 5045.653 kb on - strand, within CA265_RS20410 at 5045.777 kb on - strand, within CA265_RS20410 at 5045.787 kb on - strand, within CA265_RS20410 at 5045.787 kb on - strand, within CA265_RS20410 at 5046.038 kb on - strand at 5046.043 kb on - strand at 5046.045 kb on - strand at 5046.133 kb on - strand at 5046.194 kb on - strand at 5046.212 kb on - strand at 5046.222 kb on + strand at 5046.259 kb on - strand, within CA265_RS20415 at 5046.284 kb on - strand, within CA265_RS20415 at 5046.310 kb on + strand, within CA265_RS20415 at 5046.333 kb on - strand, within CA265_RS20415 at 5046.405 kb on + strand, within CA265_RS20415 at 5046.406 kb on - strand, within CA265_RS20415 at 5046.406 kb on - strand, within CA265_RS20415 at 5046.449 kb on + strand, within CA265_RS20415 at 5046.450 kb on - strand, within CA265_RS20415 at 5046.459 kb on + strand, within CA265_RS20415 at 5046.535 kb on + strand, within CA265_RS20415 at 5046.535 kb on + strand, within CA265_RS20415 at 5046.537 kb on + strand, within CA265_RS20415 at 5046.538 kb on - strand, within CA265_RS20415 at 5046.593 kb on - strand, within CA265_RS20415 at 5046.621 kb on + strand, within CA265_RS20415 at 5046.622 kb on - strand, within CA265_RS20415 at 5046.636 kb on + strand, within CA265_RS20415 at 5046.707 kb on + strand, within CA265_RS20415 at 5046.708 kb on - strand, within CA265_RS20415 at 5046.804 kb on + strand, within CA265_RS20415 at 5046.835 kb on + strand, within CA265_RS20415 at 5046.835 kb on + strand, within CA265_RS20415 at 5046.835 kb on + strand, within CA265_RS20415 at 5046.835 kb on + strand, within CA265_RS20415 at 5046.837 kb on + strand, within CA265_RS20415 at 5046.855 kb on + strand, within CA265_RS20415 at 5046.856 kb on - strand, within CA265_RS20415 at 5046.857 kb on + strand, within CA265_RS20415 at 5046.857 kb on + strand, within CA265_RS20415 at 5046.887 kb on + strand, within CA265_RS20415 at 5046.899 kb on - strand, within CA265_RS20415
Per-strain Table
Position Strand Gene LocusTag Fraction Agro_defined_trehalose 1x (C) remove 5,044,025 - +0.3 5,044,058 - -1.1 5,044,107 + +0.1 5,044,153 + -0.2 5,044,154 - -1.2 5,044,172 + +1.5 5,044,203 + CA265_RS20405 0.12 -0.8 5,044,204 - CA265_RS20405 0.13 +2.2 5,044,204 - CA265_RS20405 0.13 +0.2 5,044,312 + CA265_RS20405 0.27 +0.5 5,044,312 + CA265_RS20405 0.27 -1.3 5,044,312 + CA265_RS20405 0.27 +1.2 5,044,443 + CA265_RS20405 0.45 +0.5 5,044,446 - CA265_RS20405 0.46 +2.3 5,044,446 - CA265_RS20405 0.46 -2.9 5,044,500 + CA265_RS20405 0.53 +1.8 5,044,500 + CA265_RS20405 0.53 -0.1 5,044,500 + CA265_RS20405 0.53 +0.2 5,044,501 - CA265_RS20405 0.53 -1.7 5,044,504 + CA265_RS20405 0.54 +1.2 5,044,520 + CA265_RS20405 0.56 -0.3 5,044,525 + CA265_RS20405 0.56 -0.7 5,044,600 + CA265_RS20405 0.67 -2.2 5,044,601 - CA265_RS20405 0.67 -0.8 5,044,644 + CA265_RS20405 0.73 +1.0 5,044,645 - CA265_RS20405 0.73 -0.3 5,044,676 + CA265_RS20405 0.77 +1.3 5,044,696 + CA265_RS20405 0.80 -2.1 5,044,730 - CA265_RS20405 0.84 +0.6 5,044,760 - CA265_RS20405 0.89 +2.3 5,044,784 + +0.6 5,044,813 + -0.5 5,044,813 + -0.9 5,044,926 + -3.0 5,044,957 - -1.7 5,044,970 + -0.1 5,044,975 - -1.9 5,044,975 - +1.7 5,044,977 + +0.1 5,044,978 - +0.8 5,044,980 - +0.3 5,044,980 - -0.1 5,044,980 - +0.5 5,045,046 + CA265_RS20410 0.11 +0.8 5,045,047 - CA265_RS20410 0.11 -0.7 5,045,100 + CA265_RS20410 0.16 -3.5 5,045,100 + CA265_RS20410 0.16 -2.7 5,045,194 + CA265_RS20410 0.26 +1.3 5,045,194 + CA265_RS20410 0.26 +1.4 5,045,261 + CA265_RS20410 0.32 -0.0 5,045,262 - CA265_RS20410 0.32 +1.6 5,045,262 - CA265_RS20410 0.32 +0.2 5,045,262 - CA265_RS20410 0.32 -3.3 5,045,268 + CA265_RS20410 0.33 -2.3 5,045,268 + CA265_RS20410 0.33 +0.7 5,045,268 + CA265_RS20410 0.33 -0.8 5,045,354 + CA265_RS20410 0.42 -1.4 5,045,363 - CA265_RS20410 0.43 +0.2 5,045,425 + CA265_RS20410 0.49 +0.4 5,045,477 - CA265_RS20410 0.54 -1.8 5,045,483 + CA265_RS20410 0.55 -0.1 5,045,534 + CA265_RS20410 0.60 +1.8 5,045,534 + CA265_RS20410 0.60 -1.1 5,045,534 + CA265_RS20410 0.60 +1.2 5,045,535 - CA265_RS20410 0.60 -1.9 5,045,535 - CA265_RS20410 0.60 -0.5 5,045,633 + CA265_RS20410 0.70 +0.7 5,045,633 + CA265_RS20410 0.70 -1.7 5,045,634 - CA265_RS20410 0.70 +0.1 5,045,638 - CA265_RS20410 0.70 +0.9 5,045,653 - CA265_RS20410 0.72 -0.1 5,045,777 - CA265_RS20410 0.84 -4.3 5,045,787 - CA265_RS20410 0.85 -3.3 5,045,787 - CA265_RS20410 0.85 +0.3 5,046,038 - -3.5 5,046,043 - -1.5 5,046,045 - -1.0 5,046,133 - -0.0 5,046,194 - -1.7 5,046,212 - -1.1 5,046,222 + +1.8 5,046,259 - CA265_RS20415 0.11 -1.7 5,046,284 - CA265_RS20415 0.12 -1.1 5,046,310 + CA265_RS20415 0.13 -1.0 5,046,333 - CA265_RS20415 0.14 +2.0 5,046,405 + CA265_RS20415 0.17 +0.8 5,046,406 - CA265_RS20415 0.17 +0.1 5,046,406 - CA265_RS20415 0.17 -0.9 5,046,449 + CA265_RS20415 0.19 +2.5 5,046,450 - CA265_RS20415 0.19 -3.9 5,046,459 + CA265_RS20415 0.19 -3.1 5,046,535 + CA265_RS20415 0.22 -1.9 5,046,535 + CA265_RS20415 0.22 -1.7 5,046,537 + CA265_RS20415 0.22 +1.1 5,046,538 - CA265_RS20415 0.22 -0.5 5,046,593 - CA265_RS20415 0.25 +0.6 5,046,621 + CA265_RS20415 0.26 +0.2 5,046,622 - CA265_RS20415 0.26 -0.8 5,046,636 + CA265_RS20415 0.26 +0.3 5,046,707 + CA265_RS20415 0.29 +2.4 5,046,708 - CA265_RS20415 0.29 -0.0 5,046,804 + CA265_RS20415 0.33 -0.1 5,046,835 + CA265_RS20415 0.35 -1.3 5,046,835 + CA265_RS20415 0.35 +2.1 5,046,835 + CA265_RS20415 0.35 -0.7 5,046,835 + CA265_RS20415 0.35 -2.4 5,046,837 + CA265_RS20415 0.35 -1.8 5,046,855 + CA265_RS20415 0.35 +2.9 5,046,856 - CA265_RS20415 0.35 -1.6 5,046,857 + CA265_RS20415 0.36 -0.7 5,046,857 + CA265_RS20415 0.36 -0.4 5,046,887 + CA265_RS20415 0.37 -1.0 5,046,899 - CA265_RS20415 0.37 -1.6
Or see this region's nucleotide sequence