Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS04080

Experiment: Agro_defined_trehalose 1x (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS04075 and CA265_RS04080 are separated by 319 nucleotidesCA265_RS04080 and CA265_RS04085 are separated by 137 nucleotides CA265_RS04075: CA265_RS04075 - decarboxylase, at 978,155 to 979,696 _RS04075 CA265_RS04080: CA265_RS04080 - hypothetical protein, at 980,016 to 982,451 _RS04080 CA265_RS04085: CA265_RS04085 - phosphohydrolase, at 982,589 to 983,809 _RS04085 Position (kb) 980 981 982 983Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 979.158 kb on + strand, within CA265_RS04075at 979.175 kb on + strand, within CA265_RS04075at 979.187 kb on + strand, within CA265_RS04075at 979.283 kb on + strand, within CA265_RS04075at 979.317 kb on - strand, within CA265_RS04075at 979.395 kb on + strand, within CA265_RS04075at 979.396 kb on - strand, within CA265_RS04075at 979.396 kb on - strand, within CA265_RS04075at 979.526 kb on + strand, within CA265_RS04075at 979.526 kb on + strand, within CA265_RS04075at 979.527 kb on - strand, within CA265_RS04075at 979.580 kb on - strandat 979.602 kb on + strandat 979.690 kb on + strandat 979.722 kb on - strandat 979.754 kb on + strandat 980.026 kb on + strandat 980.026 kb on + strandat 980.221 kb on + strandat 980.226 kb on + strandat 980.230 kb on + strandat 980.231 kb on - strandat 980.237 kb on + strandat 980.237 kb on + strandat 980.238 kb on - strandat 980.238 kb on - strandat 980.245 kb on + strandat 980.307 kb on - strand, within CA265_RS04080at 980.315 kb on + strand, within CA265_RS04080at 980.315 kb on + strand, within CA265_RS04080at 980.315 kb on + strand, within CA265_RS04080at 980.368 kb on + strand, within CA265_RS04080at 980.369 kb on - strand, within CA265_RS04080at 980.389 kb on + strand, within CA265_RS04080at 980.559 kb on - strand, within CA265_RS04080at 980.559 kb on - strand, within CA265_RS04080at 980.621 kb on - strand, within CA265_RS04080at 980.621 kb on - strand, within CA265_RS04080at 980.621 kb on - strand, within CA265_RS04080at 980.644 kb on - strand, within CA265_RS04080at 980.678 kb on + strand, within CA265_RS04080at 980.679 kb on - strand, within CA265_RS04080at 980.731 kb on + strand, within CA265_RS04080at 980.768 kb on - strand, within CA265_RS04080at 980.768 kb on - strand, within CA265_RS04080at 980.768 kb on - strand, within CA265_RS04080at 980.774 kb on - strand, within CA265_RS04080at 980.816 kb on + strand, within CA265_RS04080at 980.886 kb on - strand, within CA265_RS04080at 980.899 kb on + strand, within CA265_RS04080at 980.904 kb on + strand, within CA265_RS04080at 980.986 kb on - strand, within CA265_RS04080at 981.132 kb on + strand, within CA265_RS04080at 981.133 kb on - strand, within CA265_RS04080at 981.169 kb on - strand, within CA265_RS04080at 981.172 kb on + strand, within CA265_RS04080at 981.232 kb on + strand, within CA265_RS04080at 981.326 kb on + strand, within CA265_RS04080at 981.326 kb on + strand, within CA265_RS04080at 981.327 kb on - strand, within CA265_RS04080at 981.420 kb on - strand, within CA265_RS04080at 981.422 kb on + strand, within CA265_RS04080at 981.422 kb on + strand, within CA265_RS04080at 981.422 kb on + strand, within CA265_RS04080at 981.422 kb on + strand, within CA265_RS04080at 981.422 kb on + strand, within CA265_RS04080at 981.423 kb on - strand, within CA265_RS04080at 981.617 kb on + strand, within CA265_RS04080at 981.645 kb on + strand, within CA265_RS04080at 981.646 kb on - strand, within CA265_RS04080at 981.751 kb on - strand, within CA265_RS04080at 981.771 kb on - strand, within CA265_RS04080at 981.852 kb on + strand, within CA265_RS04080at 981.883 kb on + strand, within CA265_RS04080at 981.883 kb on + strand, within CA265_RS04080at 981.888 kb on - strand, within CA265_RS04080at 981.898 kb on + strand, within CA265_RS04080at 981.984 kb on - strand, within CA265_RS04080at 981.984 kb on - strand, within CA265_RS04080at 981.985 kb on + strand, within CA265_RS04080at 981.985 kb on + strand, within CA265_RS04080at 981.986 kb on - strand, within CA265_RS04080at 981.986 kb on - strand, within CA265_RS04080at 982.051 kb on - strand, within CA265_RS04080at 982.093 kb on + strand, within CA265_RS04080at 982.103 kb on - strand, within CA265_RS04080at 982.103 kb on - strand, within CA265_RS04080at 982.103 kb on - strand, within CA265_RS04080at 982.103 kb on - strand, within CA265_RS04080at 982.135 kb on - strand, within CA265_RS04080at 982.165 kb on + strand, within CA265_RS04080at 982.265 kb on - strandat 982.333 kb on - strandat 982.368 kb on + strandat 982.423 kb on - strandat 982.442 kb on + strandat 982.482 kb on + strandat 982.505 kb on + strandat 982.505 kb on + strandat 982.509 kb on + strandat 982.578 kb on + strandat 982.578 kb on + strandat 982.610 kb on + strandat 982.611 kb on - strandat 982.683 kb on + strandat 982.703 kb on - strandat 982.734 kb on - strand, within CA265_RS04085at 983.035 kb on - strand, within CA265_RS04085at 983.090 kb on - strand, within CA265_RS04085at 983.091 kb on + strand, within CA265_RS04085at 983.091 kb on + strand, within CA265_RS04085at 983.101 kb on - strand, within CA265_RS04085at 983.167 kb on - strand, within CA265_RS04085at 983.167 kb on - strand, within CA265_RS04085at 983.295 kb on - strand, within CA265_RS04085at 983.353 kb on - strand, within CA265_RS04085at 983.359 kb on + strand, within CA265_RS04085at 983.360 kb on - strand, within CA265_RS04085at 983.365 kb on + strand, within CA265_RS04085at 983.383 kb on - strand, within CA265_RS04085at 983.396 kb on - strand, within CA265_RS04085at 983.411 kb on + strand, within CA265_RS04085

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Per-strain Table

Position Strand Gene LocusTag Fraction Agro_defined_trehalose 1x (C)
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979,158 + CA265_RS04075 0.65 +1.6
979,175 + CA265_RS04075 0.66 -0.5
979,187 + CA265_RS04075 0.67 +1.0
979,283 + CA265_RS04075 0.73 +0.2
979,317 - CA265_RS04075 0.75 -1.4
979,395 + CA265_RS04075 0.80 -2.0
979,396 - CA265_RS04075 0.80 -0.3
979,396 - CA265_RS04075 0.80 -0.4
979,526 + CA265_RS04075 0.89 +0.1
979,526 + CA265_RS04075 0.89 +1.0
979,527 - CA265_RS04075 0.89 +0.2
979,580 - +0.9
979,602 + -1.0
979,690 + +0.6
979,722 - -2.6
979,754 + +0.6
980,026 + -0.4
980,026 + +0.0
980,221 + +0.0
980,226 + +2.4
980,230 + -1.7
980,231 - -2.4
980,237 + -3.3
980,237 + -0.3
980,238 - +0.4
980,238 - -2.7
980,245 + -2.2
980,307 - CA265_RS04080 0.12 -1.6
980,315 + CA265_RS04080 0.12 +0.9
980,315 + CA265_RS04080 0.12 +0.4
980,315 + CA265_RS04080 0.12 -2.8
980,368 + CA265_RS04080 0.14 -0.0
980,369 - CA265_RS04080 0.14 -0.6
980,389 + CA265_RS04080 0.15 -0.5
980,559 - CA265_RS04080 0.22 -0.3
980,559 - CA265_RS04080 0.22 -0.6
980,621 - CA265_RS04080 0.25 +1.0
980,621 - CA265_RS04080 0.25 +0.6
980,621 - CA265_RS04080 0.25 -0.4
980,644 - CA265_RS04080 0.26 -2.6
980,678 + CA265_RS04080 0.27 -2.2
980,679 - CA265_RS04080 0.27 -0.0
980,731 + CA265_RS04080 0.29 -2.9
980,768 - CA265_RS04080 0.31 +0.2
980,768 - CA265_RS04080 0.31 -2.2
980,768 - CA265_RS04080 0.31 +0.8
980,774 - CA265_RS04080 0.31 +1.0
980,816 + CA265_RS04080 0.33 -0.2
980,886 - CA265_RS04080 0.36 +0.0
980,899 + CA265_RS04080 0.36 -0.3
980,904 + CA265_RS04080 0.36 +1.9
980,986 - CA265_RS04080 0.40 +0.5
981,132 + CA265_RS04080 0.46 -1.0
981,133 - CA265_RS04080 0.46 -1.2
981,169 - CA265_RS04080 0.47 +0.4
981,172 + CA265_RS04080 0.47 -1.0
981,232 + CA265_RS04080 0.50 -0.9
981,326 + CA265_RS04080 0.54 -3.2
981,326 + CA265_RS04080 0.54 -3.0
981,327 - CA265_RS04080 0.54 -0.3
981,420 - CA265_RS04080 0.58 -2.4
981,422 + CA265_RS04080 0.58 -0.2
981,422 + CA265_RS04080 0.58 +1.0
981,422 + CA265_RS04080 0.58 +0.2
981,422 + CA265_RS04080 0.58 -2.5
981,422 + CA265_RS04080 0.58 +0.4
981,423 - CA265_RS04080 0.58 -0.6
981,617 + CA265_RS04080 0.66 +0.2
981,645 + CA265_RS04080 0.67 -1.4
981,646 - CA265_RS04080 0.67 +0.3
981,751 - CA265_RS04080 0.71 +0.3
981,771 - CA265_RS04080 0.72 -1.4
981,852 + CA265_RS04080 0.75 +0.2
981,883 + CA265_RS04080 0.77 -1.2
981,883 + CA265_RS04080 0.77 +0.7
981,888 - CA265_RS04080 0.77 -0.2
981,898 + CA265_RS04080 0.77 -0.6
981,984 - CA265_RS04080 0.81 -0.1
981,984 - CA265_RS04080 0.81 -2.8
981,985 + CA265_RS04080 0.81 +1.4
981,985 + CA265_RS04080 0.81 -3.7
981,986 - CA265_RS04080 0.81 -1.0
981,986 - CA265_RS04080 0.81 -1.2
982,051 - CA265_RS04080 0.84 -3.5
982,093 + CA265_RS04080 0.85 -0.7
982,103 - CA265_RS04080 0.86 -0.8
982,103 - CA265_RS04080 0.86 -0.4
982,103 - CA265_RS04080 0.86 -0.1
982,103 - CA265_RS04080 0.86 +0.8
982,135 - CA265_RS04080 0.87 -0.5
982,165 + CA265_RS04080 0.88 +1.7
982,265 - +0.1
982,333 - -0.4
982,368 + -2.1
982,423 - +0.4
982,442 + -0.1
982,482 + +0.6
982,505 + -0.0
982,505 + +0.2
982,509 + +0.4
982,578 + +0.4
982,578 + +0.8
982,610 + +0.3
982,611 - -0.7
982,683 + +0.2
982,703 - +1.4
982,734 - CA265_RS04085 0.12 +0.2
983,035 - CA265_RS04085 0.37 -0.0
983,090 - CA265_RS04085 0.41 -0.8
983,091 + CA265_RS04085 0.41 -2.7
983,091 + CA265_RS04085 0.41 -2.1
983,101 - CA265_RS04085 0.42 +0.4
983,167 - CA265_RS04085 0.47 +0.0
983,167 - CA265_RS04085 0.47 -2.6
983,295 - CA265_RS04085 0.58 -1.0
983,353 - CA265_RS04085 0.63 +1.3
983,359 + CA265_RS04085 0.63 +1.7
983,360 - CA265_RS04085 0.63 -1.0
983,365 + CA265_RS04085 0.64 -0.3
983,383 - CA265_RS04085 0.65 +0.9
983,396 - CA265_RS04085 0.66 +0.1
983,411 + CA265_RS04085 0.67 -0.4

Or see this region's nucleotide sequence