Experiment: Agro_defined_trehalose 1x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS02875 and CA265_RS02880 are separated by 9 nucleotides CA265_RS02880 and CA265_RS02885 are separated by 375 nucleotides CA265_RS02885 and CA265_RS02890 are separated by 2 nucleotides CA265_RS02890 and CA265_RS02895 are separated by 215 nucleotides
CA265_RS02875: CA265_RS02875 - preprotein translocase subunit SecE, at 716,169 to 716,366
_RS02875
CA265_RS02880: CA265_RS02880 - transcription termination/antitermination factor NusG, at 716,376 to 716,915
_RS02880
CA265_RS02885: CA265_RS02885 - hypothetical protein, at 717,291 to 717,800
_RS02885
CA265_RS02890: CA265_RS02890 - hypothetical protein, at 717,803 to 718,321
_RS02890
CA265_RS02895: CA265_RS02895 - 50S ribosomal protein L11, at 718,537 to 718,980
_RS02895
Position (kb) 717
718 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 717.027 kb on - strand at 717.053 kb on - strand at 717.056 kb on + strand at 717.056 kb on + strand at 717.056 kb on + strand at 717.057 kb on - strand at 717.074 kb on - strand at 717.083 kb on + strand at 717.124 kb on + strand at 717.124 kb on + strand at 717.136 kb on - strand at 717.136 kb on - strand at 717.136 kb on - strand at 717.274 kb on - strand at 717.274 kb on - strand at 717.274 kb on - strand at 717.346 kb on + strand, within CA265_RS02885 at 717.346 kb on + strand, within CA265_RS02885 at 717.346 kb on + strand, within CA265_RS02885 at 717.349 kb on + strand, within CA265_RS02885 at 717.349 kb on + strand, within CA265_RS02885 at 717.402 kb on - strand, within CA265_RS02885 at 717.407 kb on + strand, within CA265_RS02885 at 717.407 kb on + strand, within CA265_RS02885 at 717.408 kb on - strand, within CA265_RS02885 at 717.429 kb on - strand, within CA265_RS02885 at 717.502 kb on + strand, within CA265_RS02885 at 717.503 kb on - strand, within CA265_RS02885 at 717.540 kb on + strand, within CA265_RS02885 at 717.542 kb on + strand, within CA265_RS02885 at 717.542 kb on + strand, within CA265_RS02885 at 717.574 kb on + strand, within CA265_RS02885 at 717.575 kb on - strand, within CA265_RS02885 at 717.575 kb on - strand, within CA265_RS02885 at 717.575 kb on - strand, within CA265_RS02885 at 717.601 kb on - strand, within CA265_RS02885 at 717.610 kb on - strand, within CA265_RS02885 at 717.616 kb on + strand, within CA265_RS02885 at 717.616 kb on + strand, within CA265_RS02885 at 717.663 kb on - strand, within CA265_RS02885 at 717.663 kb on - strand, within CA265_RS02885 at 717.664 kb on + strand, within CA265_RS02885 at 717.774 kb on - strand at 717.834 kb on + strand at 717.865 kb on - strand, within CA265_RS02890 at 717.952 kb on - strand, within CA265_RS02890 at 718.011 kb on + strand, within CA265_RS02890 at 718.012 kb on - strand, within CA265_RS02890 at 718.028 kb on - strand, within CA265_RS02890 at 718.062 kb on - strand, within CA265_RS02890 at 718.158 kb on - strand, within CA265_RS02890 at 718.205 kb on - strand, within CA265_RS02890 at 718.207 kb on - strand, within CA265_RS02890 at 718.210 kb on + strand, within CA265_RS02890 at 718.255 kb on - strand, within CA265_RS02890 at 718.257 kb on + strand, within CA265_RS02890 at 718.257 kb on + strand, within CA265_RS02890 at 718.258 kb on - strand, within CA265_RS02890 at 718.265 kb on + strand, within CA265_RS02890 at 718.267 kb on + strand, within CA265_RS02890 at 718.268 kb on - strand, within CA265_RS02890 at 718.275 kb on + strand at 718.276 kb on - strand at 718.283 kb on - strand at 718.300 kb on - strand at 718.306 kb on - strand at 718.306 kb on - strand at 718.308 kb on + strand at 718.320 kb on - strand at 718.349 kb on - strand at 718.383 kb on - strand at 718.389 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Agro_defined_trehalose 1x (C) remove 717,027 - -1.2 717,053 - +0.1 717,056 + -0.2 717,056 + +1.2 717,056 + -0.1 717,057 - +0.3 717,074 - +1.8 717,083 + -0.3 717,124 + -3.1 717,124 + +0.0 717,136 - -3.2 717,136 - +0.1 717,136 - +1.7 717,274 - +0.2 717,274 - +1.0 717,274 - -1.0 717,346 + CA265_RS02885 0.11 -0.6 717,346 + CA265_RS02885 0.11 -1.9 717,346 + CA265_RS02885 0.11 -0.3 717,349 + CA265_RS02885 0.11 -1.7 717,349 + CA265_RS02885 0.11 -1.0 717,402 - CA265_RS02885 0.22 -1.1 717,407 + CA265_RS02885 0.23 +1.2 717,407 + CA265_RS02885 0.23 +0.6 717,408 - CA265_RS02885 0.23 +1.1 717,429 - CA265_RS02885 0.27 +1.2 717,502 + CA265_RS02885 0.41 +0.2 717,503 - CA265_RS02885 0.42 +0.2 717,540 + CA265_RS02885 0.49 -0.4 717,542 + CA265_RS02885 0.49 -2.2 717,542 + CA265_RS02885 0.49 +0.3 717,574 + CA265_RS02885 0.55 +0.8 717,575 - CA265_RS02885 0.56 +1.7 717,575 - CA265_RS02885 0.56 -1.2 717,575 - CA265_RS02885 0.56 +2.2 717,601 - CA265_RS02885 0.61 -1.4 717,610 - CA265_RS02885 0.63 -0.1 717,616 + CA265_RS02885 0.64 +0.3 717,616 + CA265_RS02885 0.64 -0.7 717,663 - CA265_RS02885 0.73 +2.1 717,663 - CA265_RS02885 0.73 +2.5 717,664 + CA265_RS02885 0.73 +0.5 717,774 - +0.4 717,834 + -2.2 717,865 - CA265_RS02890 0.12 +1.1 717,952 - CA265_RS02890 0.29 +0.6 718,011 + CA265_RS02890 0.40 -0.3 718,012 - CA265_RS02890 0.40 +0.9 718,028 - CA265_RS02890 0.43 +0.5 718,062 - CA265_RS02890 0.50 +0.4 718,158 - CA265_RS02890 0.68 +0.9 718,205 - CA265_RS02890 0.77 +0.6 718,207 - CA265_RS02890 0.78 +1.0 718,210 + CA265_RS02890 0.78 +0.2 718,255 - CA265_RS02890 0.87 -0.1 718,257 + CA265_RS02890 0.87 -2.0 718,257 + CA265_RS02890 0.87 +0.5 718,258 - CA265_RS02890 0.88 +0.1 718,265 + CA265_RS02890 0.89 +0.1 718,267 + CA265_RS02890 0.89 -1.8 718,268 - CA265_RS02890 0.90 +0.7 718,275 + +0.5 718,276 - +0.4 718,283 - -0.2 718,300 - -2.7 718,306 - -2.3 718,306 - -0.7 718,308 + +1.4 718,320 - -2.7 718,349 - -0.6 718,383 - +0.7 718,389 + -2.6
Or see this region's nucleotide sequence