Experiment: Agro_defined_trehalose 1x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS02580 and CA265_RS02585 are separated by 222 nucleotides CA265_RS02585 and CA265_RS02590 are separated by 15 nucleotides
CA265_RS02580: CA265_RS02580 - hypothetical protein, at 646,624 to 647,565
_RS02580
CA265_RS02585: CA265_RS02585 - SusC/RagA family protein, at 647,788 to 651,039
_RS02585
CA265_RS02590: CA265_RS02590 - RagB/SusD family nutrient uptake outer membrane protein, at 651,055 to 652,578
_RS02590
Position (kb) 647
648
649
650
651
652 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 646.805 kb on - strand, within CA265_RS02580 at 646.805 kb on - strand, within CA265_RS02580 at 646.833 kb on + strand, within CA265_RS02580 at 646.833 kb on + strand, within CA265_RS02580 at 646.873 kb on - strand, within CA265_RS02580 at 646.876 kb on - strand, within CA265_RS02580 at 646.886 kb on + strand, within CA265_RS02580 at 646.941 kb on - strand, within CA265_RS02580 at 647.019 kb on + strand, within CA265_RS02580 at 647.116 kb on - strand, within CA265_RS02580 at 647.120 kb on + strand, within CA265_RS02580 at 647.125 kb on - strand, within CA265_RS02580 at 647.138 kb on + strand, within CA265_RS02580 at 647.138 kb on + strand, within CA265_RS02580 at 647.139 kb on - strand, within CA265_RS02580 at 647.142 kb on + strand, within CA265_RS02580 at 647.143 kb on - strand, within CA265_RS02580 at 647.143 kb on - strand, within CA265_RS02580 at 647.210 kb on + strand, within CA265_RS02580 at 647.211 kb on - strand, within CA265_RS02580 at 647.211 kb on - strand, within CA265_RS02580 at 647.211 kb on - strand, within CA265_RS02580 at 647.376 kb on - strand, within CA265_RS02580 at 647.393 kb on - strand, within CA265_RS02580 at 647.497 kb on - strand at 647.557 kb on + strand at 647.557 kb on + strand at 647.558 kb on - strand at 647.568 kb on + strand at 647.662 kb on - strand at 647.686 kb on + strand at 647.710 kb on - strand at 647.728 kb on + strand at 647.729 kb on - strand at 647.730 kb on + strand at 647.730 kb on + strand at 647.730 kb on + strand at 647.730 kb on + strand at 647.731 kb on - strand at 647.731 kb on - strand at 647.754 kb on - strand at 647.842 kb on - strand at 647.915 kb on - strand at 647.915 kb on - strand at 647.915 kb on - strand at 647.952 kb on - strand at 647.952 kb on - strand at 648.038 kb on + strand at 648.039 kb on - strand at 648.039 kb on - strand at 648.042 kb on + strand at 648.042 kb on + strand at 648.043 kb on - strand at 648.043 kb on - strand at 648.043 kb on - strand at 648.055 kb on - strand at 648.155 kb on + strand, within CA265_RS02585 at 648.175 kb on + strand, within CA265_RS02585 at 648.202 kb on - strand, within CA265_RS02585 at 648.242 kb on + strand, within CA265_RS02585 at 648.270 kb on + strand, within CA265_RS02585 at 648.294 kb on + strand, within CA265_RS02585 at 648.294 kb on + strand, within CA265_RS02585 at 648.407 kb on + strand, within CA265_RS02585 at 648.441 kb on - strand, within CA265_RS02585 at 648.446 kb on + strand, within CA265_RS02585 at 648.508 kb on - strand, within CA265_RS02585 at 648.529 kb on + strand, within CA265_RS02585 at 648.533 kb on + strand, within CA265_RS02585 at 648.582 kb on + strand, within CA265_RS02585 at 648.583 kb on - strand, within CA265_RS02585 at 648.602 kb on + strand, within CA265_RS02585 at 648.603 kb on - strand, within CA265_RS02585 at 648.603 kb on - strand, within CA265_RS02585 at 648.741 kb on - strand, within CA265_RS02585 at 648.801 kb on + strand, within CA265_RS02585 at 648.809 kb on + strand, within CA265_RS02585 at 648.904 kb on + strand, within CA265_RS02585 at 648.915 kb on + strand, within CA265_RS02585 at 648.951 kb on - strand, within CA265_RS02585 at 649.081 kb on - strand, within CA265_RS02585 at 649.114 kb on + strand, within CA265_RS02585 at 649.142 kb on - strand, within CA265_RS02585 at 649.145 kb on - strand, within CA265_RS02585 at 649.165 kb on + strand, within CA265_RS02585 at 649.425 kb on + strand, within CA265_RS02585 at 649.478 kb on + strand, within CA265_RS02585 at 649.478 kb on + strand, within CA265_RS02585 at 649.485 kb on + strand, within CA265_RS02585 at 649.559 kb on + strand, within CA265_RS02585 at 649.600 kb on + strand, within CA265_RS02585 at 649.602 kb on + strand, within CA265_RS02585 at 649.602 kb on + strand, within CA265_RS02585 at 649.603 kb on - strand, within CA265_RS02585 at 649.690 kb on + strand, within CA265_RS02585 at 649.692 kb on + strand, within CA265_RS02585 at 649.696 kb on + strand, within CA265_RS02585 at 649.761 kb on + strand, within CA265_RS02585 at 649.922 kb on + strand, within CA265_RS02585 at 649.923 kb on - strand, within CA265_RS02585 at 649.973 kb on - strand, within CA265_RS02585 at 649.976 kb on + strand, within CA265_RS02585 at 649.977 kb on - strand, within CA265_RS02585 at 650.045 kb on + strand, within CA265_RS02585 at 650.064 kb on - strand, within CA265_RS02585 at 650.064 kb on - strand, within CA265_RS02585 at 650.080 kb on + strand, within CA265_RS02585 at 650.081 kb on - strand, within CA265_RS02585 at 650.209 kb on - strand, within CA265_RS02585 at 650.229 kb on + strand, within CA265_RS02585 at 650.229 kb on + strand, within CA265_RS02585 at 650.230 kb on - strand, within CA265_RS02585 at 650.230 kb on - strand, within CA265_RS02585 at 650.309 kb on + strand, within CA265_RS02585 at 650.310 kb on - strand, within CA265_RS02585 at 650.366 kb on + strand, within CA265_RS02585 at 650.369 kb on - strand, within CA265_RS02585 at 650.369 kb on - strand, within CA265_RS02585 at 650.375 kb on - strand, within CA265_RS02585 at 650.378 kb on - strand, within CA265_RS02585 at 650.378 kb on - strand, within CA265_RS02585 at 650.378 kb on - strand, within CA265_RS02585 at 650.424 kb on + strand, within CA265_RS02585 at 650.424 kb on + strand, within CA265_RS02585 at 650.431 kb on - strand, within CA265_RS02585 at 650.512 kb on - strand, within CA265_RS02585 at 650.666 kb on - strand, within CA265_RS02585 at 650.666 kb on - strand, within CA265_RS02585 at 650.666 kb on - strand, within CA265_RS02585 at 650.830 kb on - strand at 650.834 kb on + strand at 650.834 kb on + strand at 650.835 kb on - strand at 650.913 kb on + strand at 651.013 kb on - strand at 651.023 kb on + strand at 651.029 kb on + strand at 651.035 kb on + strand at 651.073 kb on + strand at 651.076 kb on - strand at 651.126 kb on + strand at 651.126 kb on + strand at 651.183 kb on + strand at 651.274 kb on - strand, within CA265_RS02590 at 651.274 kb on - strand, within CA265_RS02590 at 651.274 kb on - strand, within CA265_RS02590 at 651.322 kb on - strand, within CA265_RS02590 at 651.328 kb on - strand, within CA265_RS02590 at 651.328 kb on - strand, within CA265_RS02590 at 651.381 kb on - strand, within CA265_RS02590 at 651.466 kb on + strand, within CA265_RS02590 at 651.466 kb on + strand, within CA265_RS02590 at 651.466 kb on + strand, within CA265_RS02590 at 651.541 kb on - strand, within CA265_RS02590 at 651.623 kb on + strand, within CA265_RS02590 at 651.720 kb on - strand, within CA265_RS02590 at 651.720 kb on - strand, within CA265_RS02590 at 651.720 kb on - strand, within CA265_RS02590 at 651.721 kb on + strand, within CA265_RS02590 at 651.775 kb on - strand, within CA265_RS02590 at 651.818 kb on + strand, within CA265_RS02590 at 651.818 kb on + strand, within CA265_RS02590 at 651.819 kb on - strand, within CA265_RS02590 at 651.852 kb on + strand, within CA265_RS02590 at 651.852 kb on + strand, within CA265_RS02590 at 651.888 kb on + strand, within CA265_RS02590 at 651.888 kb on + strand, within CA265_RS02590 at 651.889 kb on - strand, within CA265_RS02590 at 651.918 kb on - strand, within CA265_RS02590 at 651.930 kb on + strand, within CA265_RS02590 at 651.947 kb on - strand, within CA265_RS02590 at 651.964 kb on + strand, within CA265_RS02590 at 651.986 kb on - strand, within CA265_RS02590
Per-strain Table
Position Strand Gene LocusTag Fraction Agro_defined_trehalose 1x (C) remove 646,805 - CA265_RS02580 0.19 -0.4 646,805 - CA265_RS02580 0.19 -0.1 646,833 + CA265_RS02580 0.22 +0.1 646,833 + CA265_RS02580 0.22 +0.1 646,873 - CA265_RS02580 0.26 -1.5 646,876 - CA265_RS02580 0.27 +0.7 646,886 + CA265_RS02580 0.28 +1.5 646,941 - CA265_RS02580 0.34 -0.2 647,019 + CA265_RS02580 0.42 -0.3 647,116 - CA265_RS02580 0.52 +0.1 647,120 + CA265_RS02580 0.53 -0.1 647,125 - CA265_RS02580 0.53 +0.3 647,138 + CA265_RS02580 0.55 -1.2 647,138 + CA265_RS02580 0.55 +0.1 647,139 - CA265_RS02580 0.55 -2.8 647,142 + CA265_RS02580 0.55 -0.4 647,143 - CA265_RS02580 0.55 +0.1 647,143 - CA265_RS02580 0.55 -0.1 647,210 + CA265_RS02580 0.62 +1.5 647,211 - CA265_RS02580 0.62 -2.1 647,211 - CA265_RS02580 0.62 +0.1 647,211 - CA265_RS02580 0.62 -1.8 647,376 - CA265_RS02580 0.80 +1.6 647,393 - CA265_RS02580 0.82 -0.4 647,497 - -2.5 647,557 + +1.0 647,557 + +0.6 647,558 - -0.2 647,568 + +2.5 647,662 - +2.2 647,686 + -0.9 647,710 - +1.9 647,728 + -2.2 647,729 - -0.6 647,730 + -3.7 647,730 + -1.6 647,730 + +0.2 647,730 + -0.1 647,731 - +0.9 647,731 - -3.7 647,754 - -0.3 647,842 - -1.4 647,915 - +2.3 647,915 - -2.0 647,915 - -1.1 647,952 - +0.7 647,952 - -0.1 648,038 + -0.7 648,039 - +0.2 648,039 - -0.7 648,042 + +1.1 648,042 + +0.5 648,043 - -0.1 648,043 - -0.7 648,043 - -0.5 648,055 - -1.3 648,155 + CA265_RS02585 0.11 -0.7 648,175 + CA265_RS02585 0.12 -1.3 648,202 - CA265_RS02585 0.13 -1.2 648,242 + CA265_RS02585 0.14 +0.2 648,270 + CA265_RS02585 0.15 +1.7 648,294 + CA265_RS02585 0.16 -3.0 648,294 + CA265_RS02585 0.16 +2.9 648,407 + CA265_RS02585 0.19 +1.9 648,441 - CA265_RS02585 0.20 +1.1 648,446 + CA265_RS02585 0.20 -1.4 648,508 - CA265_RS02585 0.22 -0.1 648,529 + CA265_RS02585 0.23 -0.7 648,533 + CA265_RS02585 0.23 -1.6 648,582 + CA265_RS02585 0.24 -0.9 648,583 - CA265_RS02585 0.24 -0.1 648,602 + CA265_RS02585 0.25 +1.2 648,603 - CA265_RS02585 0.25 -1.0 648,603 - CA265_RS02585 0.25 +0.9 648,741 - CA265_RS02585 0.29 +0.3 648,801 + CA265_RS02585 0.31 -1.3 648,809 + CA265_RS02585 0.31 -1.2 648,904 + CA265_RS02585 0.34 +0.2 648,915 + CA265_RS02585 0.35 -0.8 648,951 - CA265_RS02585 0.36 -0.9 649,081 - CA265_RS02585 0.40 -2.3 649,114 + CA265_RS02585 0.41 -1.9 649,142 - CA265_RS02585 0.42 -3.5 649,145 - CA265_RS02585 0.42 -2.1 649,165 + CA265_RS02585 0.42 -0.3 649,425 + CA265_RS02585 0.50 -0.4 649,478 + CA265_RS02585 0.52 +0.4 649,478 + CA265_RS02585 0.52 +2.0 649,485 + CA265_RS02585 0.52 -3.7 649,559 + CA265_RS02585 0.54 -0.7 649,600 + CA265_RS02585 0.56 +0.7 649,602 + CA265_RS02585 0.56 -4.2 649,602 + CA265_RS02585 0.56 +0.4 649,603 - CA265_RS02585 0.56 -0.4 649,690 + CA265_RS02585 0.58 -0.0 649,692 + CA265_RS02585 0.59 +0.1 649,696 + CA265_RS02585 0.59 -3.8 649,761 + CA265_RS02585 0.61 -0.8 649,922 + CA265_RS02585 0.66 +0.3 649,923 - CA265_RS02585 0.66 +1.3 649,973 - CA265_RS02585 0.67 +0.3 649,976 + CA265_RS02585 0.67 -2.3 649,977 - CA265_RS02585 0.67 -1.3 650,045 + CA265_RS02585 0.69 -0.1 650,064 - CA265_RS02585 0.70 +0.3 650,064 - CA265_RS02585 0.70 -3.5 650,080 + CA265_RS02585 0.70 -0.6 650,081 - CA265_RS02585 0.71 -0.9 650,209 - CA265_RS02585 0.74 -2.7 650,229 + CA265_RS02585 0.75 +2.3 650,229 + CA265_RS02585 0.75 +1.0 650,230 - CA265_RS02585 0.75 -0.6 650,230 - CA265_RS02585 0.75 -1.8 650,309 + CA265_RS02585 0.78 -4.1 650,310 - CA265_RS02585 0.78 -1.1 650,366 + CA265_RS02585 0.79 +1.0 650,369 - CA265_RS02585 0.79 -0.2 650,369 - CA265_RS02585 0.79 +0.3 650,375 - CA265_RS02585 0.80 -2.0 650,378 - CA265_RS02585 0.80 -1.6 650,378 - CA265_RS02585 0.80 -2.4 650,378 - CA265_RS02585 0.80 -1.5 650,424 + CA265_RS02585 0.81 +0.9 650,424 + CA265_RS02585 0.81 -1.3 650,431 - CA265_RS02585 0.81 +0.2 650,512 - CA265_RS02585 0.84 +0.6 650,666 - CA265_RS02585 0.88 +2.4 650,666 - CA265_RS02585 0.88 -1.6 650,666 - CA265_RS02585 0.88 -0.6 650,830 - +0.1 650,834 + -1.1 650,834 + -1.4 650,835 - +0.8 650,913 + +1.0 651,013 - -0.9 651,023 + -0.1 651,029 + -0.5 651,035 + +1.6 651,073 + -0.9 651,076 - -0.5 651,126 + +0.8 651,126 + +1.6 651,183 + +0.6 651,274 - CA265_RS02590 0.14 +2.1 651,274 - CA265_RS02590 0.14 +1.7 651,274 - CA265_RS02590 0.14 -2.5 651,322 - CA265_RS02590 0.18 +0.3 651,328 - CA265_RS02590 0.18 -0.0 651,328 - CA265_RS02590 0.18 -1.5 651,381 - CA265_RS02590 0.21 +0.1 651,466 + CA265_RS02590 0.27 -0.8 651,466 + CA265_RS02590 0.27 +1.0 651,466 + CA265_RS02590 0.27 +0.4 651,541 - CA265_RS02590 0.32 -1.5 651,623 + CA265_RS02590 0.37 +0.2 651,720 - CA265_RS02590 0.44 -2.5 651,720 - CA265_RS02590 0.44 -0.4 651,720 - CA265_RS02590 0.44 -5.3 651,721 + CA265_RS02590 0.44 -0.8 651,775 - CA265_RS02590 0.47 +0.4 651,818 + CA265_RS02590 0.50 -2.1 651,818 + CA265_RS02590 0.50 -0.8 651,819 - CA265_RS02590 0.50 -0.3 651,852 + CA265_RS02590 0.52 -1.2 651,852 + CA265_RS02590 0.52 +1.0 651,888 + CA265_RS02590 0.55 -0.3 651,888 + CA265_RS02590 0.55 +0.2 651,889 - CA265_RS02590 0.55 -2.4 651,918 - CA265_RS02590 0.57 +0.2 651,930 + CA265_RS02590 0.57 -0.1 651,947 - CA265_RS02590 0.59 -0.6 651,964 + CA265_RS02590 0.60 +0.2 651,986 - CA265_RS02590 0.61 -0.7
Or see this region's nucleotide sequence