Experiment: Agro_defined_trehalose 1x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS01445 and CA265_RS01450 are separated by 177 nucleotides CA265_RS01450 and CA265_RS01455 are separated by 4 nucleotides
CA265_RS01445: CA265_RS01445 - hypothetical protein, at 367,303 to 368,619
_RS01445
CA265_RS01450: CA265_RS01450 - hypothetical protein, at 368,797 to 371,172
_RS01450
CA265_RS01455: CA265_RS01455 - MFS transporter, at 371,177 to 372,418
_RS01455
Position (kb) 368
369
370
371
372 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 367.854 kb on + strand, within CA265_RS01445 at 367.865 kb on - strand, within CA265_RS01445 at 367.925 kb on - strand, within CA265_RS01445 at 367.925 kb on - strand, within CA265_RS01445 at 367.925 kb on - strand, within CA265_RS01445 at 367.971 kb on - strand, within CA265_RS01445 at 368.038 kb on - strand, within CA265_RS01445 at 368.052 kb on + strand, within CA265_RS01445 at 368.073 kb on + strand, within CA265_RS01445 at 368.073 kb on + strand, within CA265_RS01445 at 368.074 kb on - strand, within CA265_RS01445 at 368.121 kb on + strand, within CA265_RS01445 at 368.206 kb on + strand, within CA265_RS01445 at 368.223 kb on - strand, within CA265_RS01445 at 368.357 kb on - strand, within CA265_RS01445 at 368.358 kb on + strand, within CA265_RS01445 at 368.443 kb on - strand, within CA265_RS01445 at 368.476 kb on + strand, within CA265_RS01445 at 368.556 kb on + strand at 368.566 kb on - strand at 368.566 kb on - strand at 368.602 kb on + strand at 368.624 kb on + strand at 368.649 kb on + strand at 368.657 kb on - strand at 368.661 kb on - strand at 368.681 kb on + strand at 368.681 kb on + strand at 368.715 kb on + strand at 368.725 kb on + strand at 368.758 kb on + strand at 368.767 kb on - strand at 368.795 kb on + strand at 368.843 kb on + strand at 368.853 kb on + strand at 368.896 kb on + strand at 369.019 kb on + strand at 369.019 kb on + strand at 369.020 kb on - strand at 369.058 kb on + strand, within CA265_RS01450 at 369.059 kb on - strand, within CA265_RS01450 at 369.064 kb on - strand, within CA265_RS01450 at 369.084 kb on - strand, within CA265_RS01450 at 369.144 kb on + strand, within CA265_RS01450 at 369.162 kb on + strand, within CA265_RS01450 at 369.163 kb on - strand, within CA265_RS01450 at 369.278 kb on - strand, within CA265_RS01450 at 369.316 kb on - strand, within CA265_RS01450 at 369.316 kb on - strand, within CA265_RS01450 at 369.408 kb on + strand, within CA265_RS01450 at 369.429 kb on + strand, within CA265_RS01450 at 369.551 kb on + strand, within CA265_RS01450 at 369.589 kb on - strand, within CA265_RS01450 at 369.662 kb on - strand, within CA265_RS01450 at 369.694 kb on + strand, within CA265_RS01450 at 369.695 kb on - strand, within CA265_RS01450 at 369.715 kb on + strand at 369.735 kb on - strand, within CA265_RS01450 at 369.777 kb on + strand, within CA265_RS01450 at 369.816 kb on + strand, within CA265_RS01450 at 369.836 kb on + strand at 369.854 kb on - strand, within CA265_RS01450 at 369.857 kb on + strand, within CA265_RS01450 at 369.909 kb on + strand, within CA265_RS01450 at 370.033 kb on - strand, within CA265_RS01450 at 370.204 kb on + strand, within CA265_RS01450 at 370.204 kb on + strand, within CA265_RS01450 at 370.205 kb on - strand, within CA265_RS01450 at 370.205 kb on - strand, within CA265_RS01450 at 370.249 kb on - strand, within CA265_RS01450 at 370.257 kb on + strand, within CA265_RS01450 at 370.333 kb on - strand, within CA265_RS01450 at 370.333 kb on - strand, within CA265_RS01450 at 370.396 kb on - strand, within CA265_RS01450 at 370.483 kb on - strand, within CA265_RS01450 at 370.483 kb on - strand, within CA265_RS01450 at 370.486 kb on - strand, within CA265_RS01450 at 370.651 kb on - strand, within CA265_RS01450 at 370.767 kb on - strand, within CA265_RS01450 at 370.809 kb on + strand, within CA265_RS01450 at 370.810 kb on - strand, within CA265_RS01450 at 370.839 kb on - strand, within CA265_RS01450 at 370.843 kb on + strand, within CA265_RS01450 at 370.843 kb on + strand, within CA265_RS01450 at 370.917 kb on - strand, within CA265_RS01450 at 370.917 kb on - strand, within CA265_RS01450 at 371.027 kb on + strand at 371.045 kb on - strand at 371.058 kb on + strand at 371.058 kb on + strand at 371.126 kb on + strand at 371.126 kb on + strand at 371.153 kb on + strand at 371.165 kb on - strand at 371.165 kb on - strand at 371.165 kb on - strand at 371.170 kb on + strand at 371.210 kb on + strand at 371.211 kb on - strand at 371.211 kb on - strand at 371.219 kb on - strand at 371.219 kb on - strand at 371.260 kb on + strand at 371.260 kb on + strand at 371.260 kb on + strand at 371.261 kb on - strand at 371.265 kb on - strand at 371.265 kb on - strand at 371.265 kb on - strand at 371.341 kb on - strand, within CA265_RS01455 at 371.354 kb on - strand, within CA265_RS01455 at 371.409 kb on + strand, within CA265_RS01455 at 371.439 kb on + strand, within CA265_RS01455 at 371.440 kb on - strand, within CA265_RS01455 at 371.449 kb on + strand, within CA265_RS01455 at 371.453 kb on - strand, within CA265_RS01455 at 371.507 kb on + strand, within CA265_RS01455 at 371.508 kb on - strand, within CA265_RS01455 at 371.508 kb on - strand, within CA265_RS01455 at 371.566 kb on + strand, within CA265_RS01455 at 371.566 kb on + strand, within CA265_RS01455 at 371.606 kb on - strand, within CA265_RS01455 at 371.606 kb on - strand, within CA265_RS01455 at 371.719 kb on - strand, within CA265_RS01455 at 371.770 kb on + strand, within CA265_RS01455 at 371.824 kb on + strand, within CA265_RS01455 at 371.825 kb on - strand, within CA265_RS01455 at 371.825 kb on - strand, within CA265_RS01455 at 371.835 kb on + strand, within CA265_RS01455 at 371.848 kb on + strand, within CA265_RS01455 at 371.854 kb on + strand, within CA265_RS01455 at 371.928 kb on + strand, within CA265_RS01455 at 371.933 kb on - strand, within CA265_RS01455 at 371.985 kb on + strand, within CA265_RS01455 at 371.985 kb on + strand, within CA265_RS01455 at 372.013 kb on - strand, within CA265_RS01455 at 372.021 kb on - strand, within CA265_RS01455 at 372.023 kb on + strand, within CA265_RS01455 at 372.049 kb on - strand, within CA265_RS01455 at 372.052 kb on + strand, within CA265_RS01455 at 372.053 kb on - strand, within CA265_RS01455 at 372.053 kb on - strand, within CA265_RS01455 at 372.085 kb on - strand, within CA265_RS01455 at 372.085 kb on - strand, within CA265_RS01455 at 372.085 kb on - strand, within CA265_RS01455 at 372.125 kb on + strand, within CA265_RS01455 at 372.125 kb on + strand, within CA265_RS01455 at 372.144 kb on + strand, within CA265_RS01455
Per-strain Table
Position Strand Gene LocusTag Fraction Agro_defined_trehalose 1x (C) remove 367,854 + CA265_RS01445 0.42 -2.6 367,865 - CA265_RS01445 0.43 -2.1 367,925 - CA265_RS01445 0.47 +2.7 367,925 - CA265_RS01445 0.47 +0.1 367,925 - CA265_RS01445 0.47 +0.2 367,971 - CA265_RS01445 0.51 -2.2 368,038 - CA265_RS01445 0.56 +0.7 368,052 + CA265_RS01445 0.57 +2.4 368,073 + CA265_RS01445 0.58 -0.0 368,073 + CA265_RS01445 0.58 +0.1 368,074 - CA265_RS01445 0.59 -1.8 368,121 + CA265_RS01445 0.62 +0.1 368,206 + CA265_RS01445 0.69 +0.7 368,223 - CA265_RS01445 0.70 +1.8 368,357 - CA265_RS01445 0.80 -0.6 368,358 + CA265_RS01445 0.80 +1.1 368,443 - CA265_RS01445 0.87 +0.2 368,476 + CA265_RS01445 0.89 +0.1 368,556 + +2.1 368,566 - +0.7 368,566 - -3.9 368,602 + -0.0 368,624 + -3.9 368,649 + +0.4 368,657 - +1.0 368,661 - +1.5 368,681 + -0.4 368,681 + +0.7 368,715 + -0.5 368,725 + -1.5 368,758 + -0.1 368,767 - -2.7 368,795 + -0.1 368,843 + +0.1 368,853 + +0.6 368,896 + -0.6 369,019 + -1.2 369,019 + +0.2 369,020 - -0.3 369,058 + CA265_RS01450 0.11 +0.2 369,059 - CA265_RS01450 0.11 -1.4 369,064 - CA265_RS01450 0.11 +0.2 369,084 - CA265_RS01450 0.12 -0.7 369,144 + CA265_RS01450 0.15 -0.5 369,162 + CA265_RS01450 0.15 +0.1 369,163 - CA265_RS01450 0.15 +0.0 369,278 - CA265_RS01450 0.20 -0.8 369,316 - CA265_RS01450 0.22 +0.6 369,316 - CA265_RS01450 0.22 +1.0 369,408 + CA265_RS01450 0.26 +0.4 369,429 + CA265_RS01450 0.27 -0.2 369,551 + CA265_RS01450 0.32 -0.3 369,589 - CA265_RS01450 0.33 +1.0 369,662 - CA265_RS01450 0.36 -1.0 369,694 + CA265_RS01450 0.38 -1.2 369,695 - CA265_RS01450 0.38 -0.7 369,715 + -0.9 369,735 - CA265_RS01450 0.39 -0.1 369,777 + CA265_RS01450 0.41 -1.4 369,816 + CA265_RS01450 0.43 -0.4 369,836 + -0.0 369,854 - CA265_RS01450 0.44 +0.6 369,857 + CA265_RS01450 0.45 -1.2 369,909 + CA265_RS01450 0.47 +1.7 370,033 - CA265_RS01450 0.52 -0.5 370,204 + CA265_RS01450 0.59 -0.1 370,204 + CA265_RS01450 0.59 +0.2 370,205 - CA265_RS01450 0.59 -1.6 370,205 - CA265_RS01450 0.59 -0.9 370,249 - CA265_RS01450 0.61 +0.8 370,257 + CA265_RS01450 0.61 -1.6 370,333 - CA265_RS01450 0.65 -2.2 370,333 - CA265_RS01450 0.65 -2.8 370,396 - CA265_RS01450 0.67 -0.7 370,483 - CA265_RS01450 0.71 +1.7 370,483 - CA265_RS01450 0.71 -1.2 370,486 - CA265_RS01450 0.71 -0.5 370,651 - CA265_RS01450 0.78 -1.0 370,767 - CA265_RS01450 0.83 -0.6 370,809 + CA265_RS01450 0.85 +0.8 370,810 - CA265_RS01450 0.85 +1.0 370,839 - CA265_RS01450 0.86 -1.0 370,843 + CA265_RS01450 0.86 -0.7 370,843 + CA265_RS01450 0.86 +3.2 370,917 - CA265_RS01450 0.89 +0.8 370,917 - CA265_RS01450 0.89 +0.9 371,027 + -1.1 371,045 - -1.0 371,058 + +0.8 371,058 + +0.4 371,126 + +1.1 371,126 + +0.6 371,153 + +0.8 371,165 - +0.8 371,165 - -1.6 371,165 - +0.2 371,170 + -0.2 371,210 + -2.5 371,211 - +0.2 371,211 - -3.1 371,219 - +0.9 371,219 - +0.4 371,260 + -1.5 371,260 + -0.2 371,260 + +0.6 371,261 - +1.0 371,265 - +1.8 371,265 - +2.6 371,265 - -0.5 371,341 - CA265_RS01455 0.13 -0.7 371,354 - CA265_RS01455 0.14 -2.6 371,409 + CA265_RS01455 0.19 -0.6 371,439 + CA265_RS01455 0.21 -0.6 371,440 - CA265_RS01455 0.21 +1.5 371,449 + CA265_RS01455 0.22 +0.2 371,453 - CA265_RS01455 0.22 +1.4 371,507 + CA265_RS01455 0.27 -1.3 371,508 - CA265_RS01455 0.27 +0.9 371,508 - CA265_RS01455 0.27 +0.8 371,566 + CA265_RS01455 0.31 -2.7 371,566 + CA265_RS01455 0.31 +1.4 371,606 - CA265_RS01455 0.35 +0.5 371,606 - CA265_RS01455 0.35 +0.5 371,719 - CA265_RS01455 0.44 -0.3 371,770 + CA265_RS01455 0.48 -3.0 371,824 + CA265_RS01455 0.52 -2.4 371,825 - CA265_RS01455 0.52 +0.8 371,825 - CA265_RS01455 0.52 +1.2 371,835 + CA265_RS01455 0.53 +0.2 371,848 + CA265_RS01455 0.54 -2.5 371,854 + CA265_RS01455 0.55 -1.8 371,928 + CA265_RS01455 0.60 -3.4 371,933 - CA265_RS01455 0.61 -0.9 371,985 + CA265_RS01455 0.65 -3.8 371,985 + CA265_RS01455 0.65 -0.9 372,013 - CA265_RS01455 0.67 +0.1 372,021 - CA265_RS01455 0.68 -0.6 372,023 + CA265_RS01455 0.68 +0.8 372,049 - CA265_RS01455 0.70 -0.9 372,052 + CA265_RS01455 0.70 +0.9 372,053 - CA265_RS01455 0.71 +0.1 372,053 - CA265_RS01455 0.71 -0.6 372,085 - CA265_RS01455 0.73 +0.2 372,085 - CA265_RS01455 0.73 +1.9 372,085 - CA265_RS01455 0.73 +1.1 372,125 + CA265_RS01455 0.76 -3.0 372,125 + CA265_RS01455 0.76 +0.1 372,144 + CA265_RS01455 0.78 -0.6
Or see this region's nucleotide sequence