Experiment: Agro_defined_trehalose 1x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS00600 and CA265_RS00605 are separated by 135 nucleotides CA265_RS00605 and CA265_RS00610 are separated by 355 nucleotides CA265_RS00610 and CA265_RS00615 are separated by 15 nucleotides
CA265_RS00600: CA265_RS00600 - recombinase RecA, at 136,471 to 137,484
_RS00600
CA265_RS00605: CA265_RS00605 - endonuclease III, at 137,620 to 138,285
_RS00605
CA265_RS00610: CA265_RS00610 - hypothetical protein, at 138,641 to 139,117
_RS00610
CA265_RS00615: CA265_RS00615 - copper oxidase, at 139,133 to 141,424
_RS00615
Position (kb) 137
138
139 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 136.632 kb on + strand, within CA265_RS00600 at 136.806 kb on + strand, within CA265_RS00600 at 136.810 kb on + strand, within CA265_RS00600 at 136.895 kb on - strand, within CA265_RS00600 at 136.911 kb on + strand, within CA265_RS00600 at 136.981 kb on + strand, within CA265_RS00600 at 137.065 kb on + strand, within CA265_RS00600 at 137.083 kb on + strand, within CA265_RS00600 at 137.119 kb on - strand, within CA265_RS00600 at 137.119 kb on - strand, within CA265_RS00600 at 137.149 kb on - strand, within CA265_RS00600 at 137.202 kb on + strand, within CA265_RS00600 at 137.244 kb on + strand, within CA265_RS00600 at 137.244 kb on + strand, within CA265_RS00600 at 137.244 kb on + strand, within CA265_RS00600 at 137.244 kb on + strand, within CA265_RS00600 at 137.327 kb on - strand, within CA265_RS00600 at 137.334 kb on + strand, within CA265_RS00600 at 137.335 kb on - strand, within CA265_RS00600 at 137.407 kb on - strand at 137.442 kb on + strand at 137.530 kb on - strand at 137.530 kb on - strand at 137.669 kb on + strand at 137.669 kb on + strand at 137.681 kb on + strand at 137.682 kb on - strand at 137.682 kb on - strand at 137.729 kb on + strand, within CA265_RS00605 at 137.894 kb on + strand, within CA265_RS00605 at 137.900 kb on - strand, within CA265_RS00605 at 137.975 kb on - strand, within CA265_RS00605 at 137.975 kb on - strand, within CA265_RS00605 at 138.030 kb on + strand, within CA265_RS00605 at 138.133 kb on + strand, within CA265_RS00605 at 138.206 kb on + strand, within CA265_RS00605 at 138.211 kb on + strand, within CA265_RS00605 at 138.212 kb on - strand, within CA265_RS00605 at 138.296 kb on - strand at 138.316 kb on - strand at 138.413 kb on - strand at 138.427 kb on + strand at 138.474 kb on + strand at 138.486 kb on - strand at 138.486 kb on - strand at 138.490 kb on - strand at 138.511 kb on - strand at 138.619 kb on + strand at 138.749 kb on + strand, within CA265_RS00610 at 138.750 kb on - strand, within CA265_RS00610 at 138.757 kb on + strand, within CA265_RS00610 at 138.778 kb on + strand, within CA265_RS00610 at 138.806 kb on - strand, within CA265_RS00610 at 138.817 kb on + strand, within CA265_RS00610 at 138.874 kb on - strand, within CA265_RS00610 at 138.908 kb on + strand, within CA265_RS00610 at 138.975 kb on + strand, within CA265_RS00610 at 138.975 kb on + strand, within CA265_RS00610 at 138.976 kb on - strand, within CA265_RS00610 at 138.998 kb on + strand, within CA265_RS00610 at 139.007 kb on + strand, within CA265_RS00610 at 139.064 kb on + strand, within CA265_RS00610 at 139.075 kb on + strand at 139.093 kb on + strand at 139.112 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Agro_defined_trehalose 1x (C) remove 136,632 + CA265_RS00600 0.16 -1.5 136,806 + CA265_RS00600 0.33 -0.7 136,810 + CA265_RS00600 0.33 -1.8 136,895 - CA265_RS00600 0.42 +0.1 136,911 + CA265_RS00600 0.43 -0.0 136,981 + CA265_RS00600 0.50 -2.0 137,065 + CA265_RS00600 0.59 +0.6 137,083 + CA265_RS00600 0.60 -4.2 137,119 - CA265_RS00600 0.64 -0.6 137,119 - CA265_RS00600 0.64 -0.9 137,149 - CA265_RS00600 0.67 -0.8 137,202 + CA265_RS00600 0.72 -0.3 137,244 + CA265_RS00600 0.76 -1.2 137,244 + CA265_RS00600 0.76 -3.1 137,244 + CA265_RS00600 0.76 -2.3 137,244 + CA265_RS00600 0.76 +0.3 137,327 - CA265_RS00600 0.84 -2.5 137,334 + CA265_RS00600 0.85 -0.1 137,335 - CA265_RS00600 0.85 -2.2 137,407 - -1.1 137,442 + -2.8 137,530 - +0.2 137,530 - -0.3 137,669 + -1.3 137,669 + +1.2 137,681 + +0.4 137,682 - -2.0 137,682 - -3.0 137,729 + CA265_RS00605 0.16 +2.5 137,894 + CA265_RS00605 0.41 +0.8 137,900 - CA265_RS00605 0.42 -0.3 137,975 - CA265_RS00605 0.53 -0.0 137,975 - CA265_RS00605 0.53 -0.0 138,030 + CA265_RS00605 0.62 +1.0 138,133 + CA265_RS00605 0.77 -0.3 138,206 + CA265_RS00605 0.88 +0.9 138,211 + CA265_RS00605 0.89 +2.0 138,212 - CA265_RS00605 0.89 +1.3 138,296 - +2.0 138,316 - -0.0 138,413 - +0.5 138,427 + -0.0 138,474 + -0.5 138,486 - -3.3 138,486 - +0.9 138,490 - +1.0 138,511 - -1.7 138,619 + +1.6 138,749 + CA265_RS00610 0.23 -0.9 138,750 - CA265_RS00610 0.23 -1.0 138,757 + CA265_RS00610 0.24 -0.4 138,778 + CA265_RS00610 0.29 -2.2 138,806 - CA265_RS00610 0.35 +0.9 138,817 + CA265_RS00610 0.37 +0.5 138,874 - CA265_RS00610 0.49 -0.2 138,908 + CA265_RS00610 0.56 +0.5 138,975 + CA265_RS00610 0.70 -0.1 138,975 + CA265_RS00610 0.70 +0.6 138,976 - CA265_RS00610 0.70 -1.5 138,998 + CA265_RS00610 0.75 -0.7 139,007 + CA265_RS00610 0.77 -0.4 139,064 + CA265_RS00610 0.89 +0.5 139,075 + +0.9 139,093 + -0.2 139,112 - -0.5
Or see this region's nucleotide sequence