Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS32580 and AZOBR_RS32585 are separated by 116 nucleotides AZOBR_RS32585 and AZOBR_RS32590 are separated by 277 nucleotides AZOBR_RS32590 and AZOBR_RS32595 are separated by 9 nucleotides
AZOBR_RS32580: AZOBR_RS32580 - hypothetical protein, at 672,573 to 675,209
_RS32580
AZOBR_RS32585: AZOBR_RS32585 - exported protein of unknown function, at 675,326 to 675,907
_RS32585
AZOBR_RS32590: AZOBR_RS32590 - circadian clock protein KaiC, at 676,185 to 677,678
_RS32590
AZOBR_RS32595: AZOBR_RS32595 - sensor protein, at 677,688 to 679,358
_RS32595
Position (kb) 676
677
678 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 675.214 kb on - strand at 675.250 kb on - strand at 675.273 kb on - strand at 675.273 kb on - strand at 675.444 kb on - strand, within AZOBR_RS32585 at 675.444 kb on - strand, within AZOBR_RS32585 at 675.449 kb on + strand, within AZOBR_RS32585 at 675.961 kb on + strand at 676.365 kb on + strand, within AZOBR_RS32590 at 676.365 kb on + strand, within AZOBR_RS32590 at 676.365 kb on + strand, within AZOBR_RS32590 at 676.365 kb on + strand, within AZOBR_RS32590 at 676.365 kb on + strand, within AZOBR_RS32590 at 676.366 kb on - strand, within AZOBR_RS32590 at 676.366 kb on - strand, within AZOBR_RS32590 at 676.366 kb on - strand, within AZOBR_RS32590 at 676.366 kb on - strand, within AZOBR_RS32590 at 676.366 kb on - strand, within AZOBR_RS32590 at 676.366 kb on - strand, within AZOBR_RS32590 at 676.366 kb on - strand, within AZOBR_RS32590 at 676.827 kb on + strand, within AZOBR_RS32590 at 677.043 kb on + strand, within AZOBR_RS32590 at 677.043 kb on + strand, within AZOBR_RS32590 at 677.043 kb on + strand, within AZOBR_RS32590 at 677.043 kb on + strand, within AZOBR_RS32590 at 677.043 kb on + strand, within AZOBR_RS32590 at 677.043 kb on + strand, within AZOBR_RS32590 at 677.043 kb on + strand, within AZOBR_RS32590 at 677.043 kb on + strand, within AZOBR_RS32590 at 677.044 kb on - strand, within AZOBR_RS32590 at 677.044 kb on - strand, within AZOBR_RS32590 at 677.044 kb on - strand, within AZOBR_RS32590 at 677.044 kb on - strand, within AZOBR_RS32590 at 677.082 kb on + strand, within AZOBR_RS32590 at 677.083 kb on - strand, within AZOBR_RS32590 at 677.290 kb on - strand, within AZOBR_RS32590 at 677.290 kb on - strand, within AZOBR_RS32590 at 677.349 kb on + strand, within AZOBR_RS32590 at 677.349 kb on + strand, within AZOBR_RS32590 at 677.349 kb on + strand, within AZOBR_RS32590 at 677.350 kb on - strand, within AZOBR_RS32590 at 677.350 kb on - strand, within AZOBR_RS32590 at 677.628 kb on + strand at 677.628 kb on + strand at 677.628 kb on + strand at 677.628 kb on + strand at 677.629 kb on - strand at 677.629 kb on - strand at 677.629 kb on - strand at 677.629 kb on - strand at 677.629 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 675,214 - +0.4 675,250 - +1.5 675,273 - -1.1 675,273 - -0.5 675,444 - AZOBR_RS32585 0.20 -1.0 675,444 - AZOBR_RS32585 0.20 -1.7 675,449 + AZOBR_RS32585 0.21 -2.5 675,961 + -4.6 676,365 + AZOBR_RS32590 0.12 -0.3 676,365 + AZOBR_RS32590 0.12 +0.5 676,365 + AZOBR_RS32590 0.12 -1.4 676,365 + AZOBR_RS32590 0.12 -1.6 676,365 + AZOBR_RS32590 0.12 +0.4 676,366 - AZOBR_RS32590 0.12 -3.7 676,366 - AZOBR_RS32590 0.12 +0.1 676,366 - AZOBR_RS32590 0.12 -1.9 676,366 - AZOBR_RS32590 0.12 +0.7 676,366 - AZOBR_RS32590 0.12 -1.6 676,366 - AZOBR_RS32590 0.12 +0.4 676,366 - AZOBR_RS32590 0.12 -2.4 676,827 + AZOBR_RS32590 0.43 -3.1 677,043 + AZOBR_RS32590 0.57 -0.4 677,043 + AZOBR_RS32590 0.57 -1.1 677,043 + AZOBR_RS32590 0.57 -2.6 677,043 + AZOBR_RS32590 0.57 -3.6 677,043 + AZOBR_RS32590 0.57 -2.0 677,043 + AZOBR_RS32590 0.57 +0.2 677,043 + AZOBR_RS32590 0.57 -0.3 677,043 + AZOBR_RS32590 0.57 +0.6 677,044 - AZOBR_RS32590 0.57 +0.4 677,044 - AZOBR_RS32590 0.57 -1.5 677,044 - AZOBR_RS32590 0.57 +0.0 677,044 - AZOBR_RS32590 0.57 +0.5 677,082 + AZOBR_RS32590 0.60 +2.4 677,083 - AZOBR_RS32590 0.60 -0.8 677,290 - AZOBR_RS32590 0.74 -3.1 677,290 - AZOBR_RS32590 0.74 -3.9 677,349 + AZOBR_RS32590 0.78 -0.2 677,349 + AZOBR_RS32590 0.78 +0.1 677,349 + AZOBR_RS32590 0.78 -0.0 677,350 - AZOBR_RS32590 0.78 -4.3 677,350 - AZOBR_RS32590 0.78 +0.5 677,628 + -3.5 677,628 + +1.4 677,628 + -0.1 677,628 + -1.6 677,629 - -1.2 677,629 - +0.5 677,629 - -0.7 677,629 - +1.2 677,629 - +1.8
Or see this region's nucleotide sequence