Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS30545 and AZOBR_RS30550 are separated by 34 nucleotides AZOBR_RS30550 and AZOBR_RS30555 are separated by 316 nucleotides
AZOBR_RS30545: AZOBR_RS30545 - putative DNA-binding response regulator in two-component system with YedV, at 202,968 to 203,543
_RS30545
AZOBR_RS30550: AZOBR_RS30550 - hypothetical protein, at 203,578 to 203,982
_RS30550
AZOBR_RS30555: AZOBR_RS30555 - hypothetical protein, at 204,299 to 205,441
_RS30555
Position (kb) 202
203
204 Strain fitness (log2 ratio) -2
-1
0
1
2 at 202.282 kb on + strand at 202.333 kb on + strand at 202.333 kb on + strand at 202.334 kb on - strand at 202.334 kb on - strand at 202.492 kb on + strand at 202.493 kb on - strand at 202.585 kb on - strand at 202.587 kb on - strand at 202.754 kb on - strand at 203.109 kb on + strand, within AZOBR_RS30545 at 203.109 kb on + strand, within AZOBR_RS30545 at 203.109 kb on + strand, within AZOBR_RS30545 at 203.110 kb on - strand, within AZOBR_RS30545 at 203.110 kb on - strand, within AZOBR_RS30545 at 203.110 kb on - strand, within AZOBR_RS30545 at 203.592 kb on + strand at 203.737 kb on + strand, within AZOBR_RS30550 at 203.738 kb on - strand, within AZOBR_RS30550 at 203.738 kb on - strand, within AZOBR_RS30550 at 203.738 kb on - strand, within AZOBR_RS30550 at 203.738 kb on - strand, within AZOBR_RS30550 at 204.270 kb on - strand at 204.270 kb on - strand at 204.428 kb on + strand, within AZOBR_RS30555 at 204.533 kb on + strand, within AZOBR_RS30555 at 204.533 kb on + strand, within AZOBR_RS30555 at 204.533 kb on + strand, within AZOBR_RS30555 at 204.533 kb on + strand, within AZOBR_RS30555 at 204.534 kb on - strand, within AZOBR_RS30555
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 202,282 + -0.4 202,333 + +1.6 202,333 + -1.2 202,334 - +1.3 202,334 - -1.0 202,492 + +0.7 202,493 - +0.0 202,585 - -1.0 202,587 - +0.1 202,754 - +0.8 203,109 + AZOBR_RS30545 0.24 +0.1 203,109 + AZOBR_RS30545 0.24 -2.6 203,109 + AZOBR_RS30545 0.24 -0.9 203,110 - AZOBR_RS30545 0.25 -1.8 203,110 - AZOBR_RS30545 0.25 +0.1 203,110 - AZOBR_RS30545 0.25 -0.7 203,592 + -0.8 203,737 + AZOBR_RS30550 0.39 +0.0 203,738 - AZOBR_RS30550 0.40 +1.9 203,738 - AZOBR_RS30550 0.40 -0.0 203,738 - AZOBR_RS30550 0.40 +0.1 203,738 - AZOBR_RS30550 0.40 -1.1 204,270 - -0.4 204,270 - -0.3 204,428 + AZOBR_RS30555 0.11 -1.9 204,533 + AZOBR_RS30555 0.20 -0.8 204,533 + AZOBR_RS30555 0.20 -0.5 204,533 + AZOBR_RS30555 0.20 +0.1 204,533 + AZOBR_RS30555 0.20 +1.0 204,534 - AZOBR_RS30555 0.21 +0.4
Or see this region's nucleotide sequence