Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS29420 and AZOBR_RS29425 are separated by 519 nucleotides AZOBR_RS29425 and AZOBR_RS29430 are separated by 16 nucleotides AZOBR_RS29430 and AZOBR_RS29435 overlap by 4 nucleotides
AZOBR_RS29420: AZOBR_RS29420 - nitrilase, at 721,121 to 722,050
_RS29420
AZOBR_RS29425: AZOBR_RS29425 - hypothetical protein, at 722,570 to 723,424
_RS29425
AZOBR_RS29430: AZOBR_RS29430 - hemin ABC transporter substrate-binding protein, at 723,441 to 724,316
_RS29430
AZOBR_RS29435: AZOBR_RS29435 - hemin ABC transporter permease, at 724,313 to 725,422
_RS29435
Position (kb) 722
723
724 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 721.622 kb on + strand, within AZOBR_RS29420 at 721.622 kb on + strand, within AZOBR_RS29420 at 721.622 kb on + strand, within AZOBR_RS29420 at 721.622 kb on + strand, within AZOBR_RS29420 at 721.622 kb on + strand, within AZOBR_RS29420 at 721.623 kb on - strand, within AZOBR_RS29420 at 721.623 kb on - strand, within AZOBR_RS29420 at 721.623 kb on - strand, within AZOBR_RS29420 at 721.623 kb on - strand, within AZOBR_RS29420 at 721.623 kb on - strand, within AZOBR_RS29420 at 721.623 kb on - strand, within AZOBR_RS29420 at 721.623 kb on - strand, within AZOBR_RS29420 at 721.647 kb on - strand, within AZOBR_RS29420 at 721.647 kb on - strand, within AZOBR_RS29420 at 721.649 kb on + strand, within AZOBR_RS29420 at 721.650 kb on - strand, within AZOBR_RS29420 at 722.143 kb on - strand at 722.235 kb on + strand at 722.235 kb on + strand at 722.235 kb on + strand at 722.235 kb on + strand at 722.276 kb on - strand at 723.305 kb on + strand, within AZOBR_RS29425 at 723.306 kb on - strand, within AZOBR_RS29425 at 723.306 kb on - strand, within AZOBR_RS29425 at 723.651 kb on + strand, within AZOBR_RS29430 at 723.651 kb on + strand, within AZOBR_RS29430 at 723.651 kb on + strand, within AZOBR_RS29430 at 723.652 kb on - strand, within AZOBR_RS29430 at 724.062 kb on + strand, within AZOBR_RS29430 at 724.062 kb on + strand, within AZOBR_RS29430 at 724.062 kb on + strand, within AZOBR_RS29430 at 724.063 kb on - strand, within AZOBR_RS29430
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 721,622 + AZOBR_RS29420 0.54 +1.2 721,622 + AZOBR_RS29420 0.54 -1.3 721,622 + AZOBR_RS29420 0.54 +0.9 721,622 + AZOBR_RS29420 0.54 -0.6 721,622 + AZOBR_RS29420 0.54 +0.2 721,623 - AZOBR_RS29420 0.54 -1.2 721,623 - AZOBR_RS29420 0.54 -1.4 721,623 - AZOBR_RS29420 0.54 -2.4 721,623 - AZOBR_RS29420 0.54 +0.9 721,623 - AZOBR_RS29420 0.54 -3.8 721,623 - AZOBR_RS29420 0.54 -2.5 721,623 - AZOBR_RS29420 0.54 +2.0 721,647 - AZOBR_RS29420 0.57 -2.8 721,647 - AZOBR_RS29420 0.57 -0.0 721,649 + AZOBR_RS29420 0.57 +0.0 721,650 - AZOBR_RS29420 0.57 +0.7 722,143 - +1.4 722,235 + -3.3 722,235 + +0.2 722,235 + -1.7 722,235 + -0.4 722,276 - -4.3 723,305 + AZOBR_RS29425 0.86 +0.2 723,306 - AZOBR_RS29425 0.86 +0.1 723,306 - AZOBR_RS29425 0.86 +2.2 723,651 + AZOBR_RS29430 0.24 -0.7 723,651 + AZOBR_RS29430 0.24 -1.3 723,651 + AZOBR_RS29430 0.24 +1.7 723,652 - AZOBR_RS29430 0.24 -0.3 724,062 + AZOBR_RS29430 0.71 -1.9 724,062 + AZOBR_RS29430 0.71 -3.0 724,062 + AZOBR_RS29430 0.71 -3.5 724,063 - AZOBR_RS29430 0.71 -0.6
Or see this region's nucleotide sequence