Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS28305 and AZOBR_RS28310 are separated by 543 nucleotides AZOBR_RS28310 and AZOBR_RS28315 are separated by 4 nucleotides AZOBR_RS28315 and AZOBR_RS28320 are separated by 204 nucleotides
AZOBR_RS28305: AZOBR_RS28305 - histidine kinase, at 520,001 to 521,959
_RS28305
AZOBR_RS28310: AZOBR_RS28310 - hypothetical protein, at 522,503 to 522,919
_RS28310
AZOBR_RS28315: AZOBR_RS28315 - hypothetical protein, at 522,924 to 523,853
_RS28315
AZOBR_RS28320: AZOBR_RS28320 - hypothetical protein, at 524,058 to 525,119
_RS28320
Position (kb) 522
523
524 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 522.917 kb on + strand at 522.918 kb on - strand at 522.918 kb on - strand at 522.918 kb on - strand at 522.948 kb on + strand at 522.948 kb on + strand at 522.953 kb on + strand at 523.236 kb on + strand, within AZOBR_RS28315 at 523.281 kb on + strand, within AZOBR_RS28315 at 523.281 kb on + strand, within AZOBR_RS28315 at 523.281 kb on + strand, within AZOBR_RS28315 at 523.521 kb on + strand, within AZOBR_RS28315 at 523.521 kb on + strand, within AZOBR_RS28315 at 523.521 kb on + strand, within AZOBR_RS28315 at 523.521 kb on + strand, within AZOBR_RS28315 at 523.521 kb on + strand, within AZOBR_RS28315 at 523.521 kb on + strand, within AZOBR_RS28315 at 523.521 kb on + strand, within AZOBR_RS28315 at 523.521 kb on + strand, within AZOBR_RS28315 at 523.522 kb on - strand, within AZOBR_RS28315 at 523.522 kb on - strand, within AZOBR_RS28315 at 523.522 kb on - strand, within AZOBR_RS28315 at 523.522 kb on - strand, within AZOBR_RS28315 at 523.522 kb on - strand, within AZOBR_RS28315 at 523.522 kb on - strand, within AZOBR_RS28315 at 523.522 kb on - strand, within AZOBR_RS28315 at 523.522 kb on - strand, within AZOBR_RS28315 at 523.522 kb on - strand, within AZOBR_RS28315 at 523.593 kb on - strand, within AZOBR_RS28315 at 523.879 kb on + strand at 523.880 kb on - strand at 524.259 kb on - strand, within AZOBR_RS28320 at 524.259 kb on - strand, within AZOBR_RS28320 at 524.259 kb on - strand, within AZOBR_RS28320 at 524.259 kb on - strand, within AZOBR_RS28320 at 524.259 kb on - strand, within AZOBR_RS28320 at 524.466 kb on + strand, within AZOBR_RS28320 at 524.466 kb on + strand, within AZOBR_RS28320 at 524.466 kb on + strand, within AZOBR_RS28320 at 524.467 kb on - strand, within AZOBR_RS28320 at 524.508 kb on + strand, within AZOBR_RS28320 at 524.508 kb on + strand, within AZOBR_RS28320 at 524.508 kb on + strand, within AZOBR_RS28320 at 524.509 kb on - strand, within AZOBR_RS28320 at 524.509 kb on - strand, within AZOBR_RS28320 at 524.818 kb on - strand, within AZOBR_RS28320 at 524.848 kb on - strand, within AZOBR_RS28320
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 522,917 + -0.2 522,918 - +0.7 522,918 - +0.8 522,918 - -0.3 522,948 + +0.6 522,948 + +0.2 522,953 + -1.0 523,236 + AZOBR_RS28315 0.34 +0.9 523,281 + AZOBR_RS28315 0.38 +1.2 523,281 + AZOBR_RS28315 0.38 +0.5 523,281 + AZOBR_RS28315 0.38 -1.3 523,521 + AZOBR_RS28315 0.64 +0.4 523,521 + AZOBR_RS28315 0.64 -2.0 523,521 + AZOBR_RS28315 0.64 +0.7 523,521 + AZOBR_RS28315 0.64 +0.8 523,521 + AZOBR_RS28315 0.64 +1.4 523,521 + AZOBR_RS28315 0.64 -0.3 523,521 + AZOBR_RS28315 0.64 +0.1 523,521 + AZOBR_RS28315 0.64 +0.1 523,522 - AZOBR_RS28315 0.64 -0.3 523,522 - AZOBR_RS28315 0.64 +1.8 523,522 - AZOBR_RS28315 0.64 +1.9 523,522 - AZOBR_RS28315 0.64 -2.4 523,522 - AZOBR_RS28315 0.64 +0.8 523,522 - AZOBR_RS28315 0.64 +0.7 523,522 - AZOBR_RS28315 0.64 +0.2 523,522 - AZOBR_RS28315 0.64 +0.5 523,522 - AZOBR_RS28315 0.64 +0.7 523,593 - AZOBR_RS28315 0.72 +3.2 523,879 + -0.6 523,880 - -1.6 524,259 - AZOBR_RS28320 0.19 +0.5 524,259 - AZOBR_RS28320 0.19 -0.4 524,259 - AZOBR_RS28320 0.19 +1.1 524,259 - AZOBR_RS28320 0.19 -0.8 524,259 - AZOBR_RS28320 0.19 +0.3 524,466 + AZOBR_RS28320 0.38 +0.8 524,466 + AZOBR_RS28320 0.38 +0.6 524,466 + AZOBR_RS28320 0.38 +1.1 524,467 - AZOBR_RS28320 0.39 +2.4 524,508 + AZOBR_RS28320 0.42 +1.7 524,508 + AZOBR_RS28320 0.42 +1.4 524,508 + AZOBR_RS28320 0.42 -1.0 524,509 - AZOBR_RS28320 0.42 +1.6 524,509 - AZOBR_RS28320 0.42 +3.0 524,818 - AZOBR_RS28320 0.72 +0.8 524,848 - AZOBR_RS28320 0.74 -0.7
Or see this region's nucleotide sequence