Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS26770

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS26765 and AZOBR_RS26770 are separated by 29 nucleotidesAZOBR_RS26770 and AZOBR_RS26775 are separated by 763 nucleotides AZOBR_RS26765: AZOBR_RS26765 - transcriptional regulator, at 154,781 to 155,659 _RS26765 AZOBR_RS26770: AZOBR_RS26770 - hypothetical protein, at 155,689 to 155,904 _RS26770 AZOBR_RS26775: AZOBR_RS26775 - hisitidine kinase, at 156,668 to 157,786 _RS26775 Position (kb) 155 156Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 154.734 kb on - strandat 154.756 kb on + strandat 155.377 kb on + strand, within AZOBR_RS26765at 155.911 kb on + strandat 156.128 kb on + strandat 156.421 kb on + strandat 156.421 kb on + strandat 156.584 kb on - strandat 156.616 kb on - strandat 156.770 kb on + strandat 156.770 kb on + strandat 156.770 kb on + strandat 156.770 kb on + strandat 156.771 kb on - strandat 156.771 kb on - strandat 156.771 kb on - strandat 156.771 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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154,734 - +0.3
154,756 + -0.2
155,377 + AZOBR_RS26765 0.68 -3.2
155,911 + -1.2
156,128 + +4.1
156,421 + +4.3
156,421 + +2.7
156,584 - -0.7
156,616 - -0.1
156,770 + -1.5
156,770 + -0.3
156,770 + -1.2
156,770 + +0.1
156,771 - +0.5
156,771 - +0.5
156,771 - -1.4
156,771 - +2.8

Or see this region's nucleotide sequence