Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS26620 and AZOBR_RS26625 are separated by 119 nucleotides AZOBR_RS26625 and AZOBR_RS26630 are separated by 65 nucleotides AZOBR_RS26630 and AZOBR_RS26635 are separated by 32 nucleotides
AZOBR_RS26620: AZOBR_RS26620 - putative transcriptional regulator GntR family, at 117,133 to 117,807
_RS26620
AZOBR_RS26625: AZOBR_RS26625 - dehydroascorbate transporter, at 117,927 to 119,210
_RS26625
AZOBR_RS26630: AZOBR_RS26630 - ABC transporter permease, at 119,276 to 119,785
_RS26630
AZOBR_RS26635: AZOBR_RS26635 - mandelate racemase, at 119,818 to 120,999
_RS26635
Position (kb) 117
118
119
120 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 117.134 kb on + strand at 117.458 kb on + strand, within AZOBR_RS26620 at 117.458 kb on + strand, within AZOBR_RS26620 at 117.458 kb on + strand, within AZOBR_RS26620 at 117.459 kb on - strand, within AZOBR_RS26620 at 117.605 kb on + strand, within AZOBR_RS26620 at 117.686 kb on + strand, within AZOBR_RS26620 at 117.867 kb on + strand at 117.867 kb on + strand at 118.144 kb on + strand, within AZOBR_RS26625 at 118.417 kb on + strand, within AZOBR_RS26625 at 118.472 kb on - strand, within AZOBR_RS26625 at 118.472 kb on - strand, within AZOBR_RS26625 at 118.735 kb on + strand, within AZOBR_RS26625 at 118.736 kb on - strand, within AZOBR_RS26625 at 118.819 kb on + strand, within AZOBR_RS26625 at 118.820 kb on - strand, within AZOBR_RS26625 at 119.391 kb on + strand, within AZOBR_RS26630 at 119.391 kb on + strand, within AZOBR_RS26630 at 119.391 kb on + strand, within AZOBR_RS26630 at 119.843 kb on + strand at 120.017 kb on + strand, within AZOBR_RS26635 at 120.017 kb on + strand, within AZOBR_RS26635
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 117,134 + +0.7 117,458 + AZOBR_RS26620 0.48 -2.2 117,458 + AZOBR_RS26620 0.48 +2.4 117,458 + AZOBR_RS26620 0.48 +0.4 117,459 - AZOBR_RS26620 0.48 -0.3 117,605 + AZOBR_RS26620 0.70 +0.2 117,686 + AZOBR_RS26620 0.82 -1.5 117,867 + +0.5 117,867 + +0.9 118,144 + AZOBR_RS26625 0.17 +0.3 118,417 + AZOBR_RS26625 0.38 +0.5 118,472 - AZOBR_RS26625 0.42 +1.0 118,472 - AZOBR_RS26625 0.42 -1.7 118,735 + AZOBR_RS26625 0.63 -4.0 118,736 - AZOBR_RS26625 0.63 -0.8 118,819 + AZOBR_RS26625 0.69 +1.7 118,820 - AZOBR_RS26625 0.70 -0.0 119,391 + AZOBR_RS26630 0.23 -0.7 119,391 + AZOBR_RS26630 0.23 +0.2 119,391 + AZOBR_RS26630 0.23 -0.8 119,843 + -1.7 120,017 + AZOBR_RS26635 0.17 +0.1 120,017 + AZOBR_RS26635 0.17 +0.4
Or see this region's nucleotide sequence