Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS26610 and AZOBR_RS26615 are separated by 20 nucleotides AZOBR_RS26615 and AZOBR_RS26620 are separated by 244 nucleotides AZOBR_RS26620 and AZOBR_RS26625 are separated by 119 nucleotides
AZOBR_RS26610: AZOBR_RS26610 - iron dicitrate transport regulator FecR, at 115,231 to 116,274
_RS26610
AZOBR_RS26615: AZOBR_RS26615 - RNA polymerase, at 116,295 to 116,888
_RS26615
AZOBR_RS26620: AZOBR_RS26620 - putative transcriptional regulator GntR family, at 117,133 to 117,807
_RS26620
AZOBR_RS26625: AZOBR_RS26625 - dehydroascorbate transporter, at 117,927 to 119,210
_RS26625
Position (kb) 117
118 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 116.313 kb on + strand at 116.313 kb on + strand at 116.313 kb on + strand at 116.314 kb on - strand at 116.314 kb on - strand at 116.314 kb on - strand at 116.764 kb on + strand, within AZOBR_RS26615 at 116.765 kb on - strand, within AZOBR_RS26615 at 116.765 kb on - strand, within AZOBR_RS26615 at 116.765 kb on - strand, within AZOBR_RS26615 at 117.134 kb on + strand at 117.458 kb on + strand, within AZOBR_RS26620 at 117.458 kb on + strand, within AZOBR_RS26620 at 117.458 kb on + strand, within AZOBR_RS26620 at 117.459 kb on - strand, within AZOBR_RS26620 at 117.605 kb on + strand, within AZOBR_RS26620 at 117.686 kb on + strand, within AZOBR_RS26620 at 117.867 kb on + strand at 117.867 kb on + strand at 118.144 kb on + strand, within AZOBR_RS26625 at 118.417 kb on + strand, within AZOBR_RS26625 at 118.472 kb on - strand, within AZOBR_RS26625 at 118.472 kb on - strand, within AZOBR_RS26625 at 118.735 kb on + strand, within AZOBR_RS26625 at 118.736 kb on - strand, within AZOBR_RS26625
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 116,313 + -1.9 116,313 + -0.5 116,313 + -2.7 116,314 - -0.1 116,314 - +1.3 116,314 - +0.8 116,764 + AZOBR_RS26615 0.79 -2.3 116,765 - AZOBR_RS26615 0.79 -1.0 116,765 - AZOBR_RS26615 0.79 -3.3 116,765 - AZOBR_RS26615 0.79 +0.0 117,134 + +0.7 117,458 + AZOBR_RS26620 0.48 -2.2 117,458 + AZOBR_RS26620 0.48 +2.4 117,458 + AZOBR_RS26620 0.48 +0.4 117,459 - AZOBR_RS26620 0.48 -0.3 117,605 + AZOBR_RS26620 0.70 +0.2 117,686 + AZOBR_RS26620 0.82 -1.5 117,867 + +0.5 117,867 + +0.9 118,144 + AZOBR_RS26625 0.17 +0.3 118,417 + AZOBR_RS26625 0.38 +0.5 118,472 - AZOBR_RS26625 0.42 +1.0 118,472 - AZOBR_RS26625 0.42 -1.7 118,735 + AZOBR_RS26625 0.63 -4.0 118,736 - AZOBR_RS26625 0.63 -0.8
Or see this region's nucleotide sequence