Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS23080

Experiment: outer cut, LB soft agar motility assay

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS23080 and AZOBR_RS23085 overlap by 4 nucleotides AZOBR_RS23080: AZOBR_RS23080 - ribulose 1 5-bisphosphate carboxylase, at 194,572 to 195,843 _RS23080 AZOBR_RS23085: AZOBR_RS23085 - type III effector Hrp-dependent outer protein, at 195,840 to 197,147 _RS23085 Position (kb) 194 195 196Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 193.775 kb on + strandat 193.839 kb on - strandat 193.842 kb on - strandat 193.974 kb on - strandat 194.004 kb on + strandat 194.059 kb on + strandat 194.092 kb on + strandat 194.128 kb on + strandat 194.155 kb on + strandat 194.155 kb on + strandat 194.155 kb on + strandat 194.156 kb on - strandat 194.161 kb on + strandat 194.263 kb on + strandat 194.263 kb on + strandat 194.263 kb on + strandat 194.264 kb on - strandat 194.311 kb on + strandat 194.311 kb on + strandat 194.327 kb on - strandat 194.327 kb on - strandat 194.411 kb on - strandat 194.411 kb on - strandat 194.426 kb on - strandat 194.600 kb on - strandat 195.455 kb on - strand, within AZOBR_RS23080at 196.107 kb on + strand, within AZOBR_RS23085at 196.107 kb on + strand, within AZOBR_RS23085at 196.108 kb on - strand, within AZOBR_RS23085at 196.108 kb on - strand, within AZOBR_RS23085at 196.402 kb on - strand, within AZOBR_RS23085at 196.750 kb on + strand, within AZOBR_RS23085

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
remove
193,775 + -0.0
193,839 - -2.3
193,842 - +0.2
193,974 - +0.0
194,004 + -0.8
194,059 + +0.9
194,092 + -1.6
194,128 + +0.0
194,155 + -0.0
194,155 + -3.2
194,155 + +5.1
194,156 - -1.7
194,161 + +0.7
194,263 + +1.5
194,263 + -2.2
194,263 + +0.7
194,264 - -3.3
194,311 + -1.9
194,311 + +0.1
194,327 - +0.7
194,327 - +0.6
194,411 - -1.2
194,411 - +1.3
194,426 - -1.5
194,600 - -0.1
195,455 - AZOBR_RS23080 0.69 +1.4
196,107 + AZOBR_RS23085 0.20 -0.7
196,107 + AZOBR_RS23085 0.20 -3.6
196,108 - AZOBR_RS23085 0.20 +0.3
196,108 - AZOBR_RS23085 0.20 +0.4
196,402 - AZOBR_RS23085 0.43 +0.9
196,750 + AZOBR_RS23085 0.70 +2.4

Or see this region's nucleotide sequence