Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS21765 and AZOBR_RS21770 are separated by 8 nucleotides AZOBR_RS21770 and AZOBR_RS21775 are separated by 8 nucleotides AZOBR_RS21775 and AZOBR_RS21780 are separated by 23 nucleotides
AZOBR_RS21765: AZOBR_RS21765 - peptide ABC transporter permease, at 1,658,945 to 1,659,955
_RS21765
AZOBR_RS21770: AZOBR_RS21770 - peptide ABC transporter, at 1,659,964 to 1,660,890
_RS21770
AZOBR_RS21775: AZOBR_RS21775 - peptide ABC transporter ATP-binding protein, at 1,660,899 to 1,661,888
_RS21775
AZOBR_RS21780: AZOBR_RS21780 - peptide ABC transporter ATP-binding protein, at 1,661,912 to 1,662,892
_RS21780
Position (kb) 1660
1661
1662 Strain fitness (log2 ratio) -1
0
1
2 at 1660.057 kb on + strand, within AZOBR_RS21770 at 1660.058 kb on - strand, within AZOBR_RS21770 at 1660.513 kb on + strand, within AZOBR_RS21770 at 1660.514 kb on - strand, within AZOBR_RS21770 at 1660.561 kb on + strand, within AZOBR_RS21770 at 1660.561 kb on + strand, within AZOBR_RS21770 at 1661.580 kb on + strand, within AZOBR_RS21775 at 1661.581 kb on - strand, within AZOBR_RS21775 at 1661.581 kb on - strand, within AZOBR_RS21775 at 1661.644 kb on - strand, within AZOBR_RS21775 at 1661.844 kb on + strand at 1661.963 kb on + strand at 1661.964 kb on - strand at 1661.964 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 1,660,057 + AZOBR_RS21770 0.10 -1.6 1,660,058 - AZOBR_RS21770 0.10 +1.3 1,660,513 + AZOBR_RS21770 0.59 +2.1 1,660,514 - AZOBR_RS21770 0.59 +0.8 1,660,561 + AZOBR_RS21770 0.64 +1.0 1,660,561 + AZOBR_RS21770 0.64 -1.2 1,661,580 + AZOBR_RS21775 0.69 +0.0 1,661,581 - AZOBR_RS21775 0.69 +0.6 1,661,581 - AZOBR_RS21775 0.69 -1.3 1,661,644 - AZOBR_RS21775 0.75 +1.0 1,661,844 + -0.1 1,661,963 + +1.2 1,661,964 - -0.3 1,661,964 - -0.7
Or see this region's nucleotide sequence