Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS21565 and AZOBR_RS21570 are separated by 90 nucleotides AZOBR_RS21570 and AZOBR_RS21575 overlap by 4 nucleotides AZOBR_RS21575 and AZOBR_RS21580 are separated by 15 nucleotides
AZOBR_RS21565: AZOBR_RS21565 - hypothetical protein, at 1,614,656 to 1,616,038
_RS21565
AZOBR_RS21570: AZOBR_RS21570 - N-acetylneuraminate synthase, at 1,616,129 to 1,617,181
_RS21570
AZOBR_RS21575: AZOBR_RS21575 - spore coat protein, at 1,617,178 to 1,617,936
_RS21575
AZOBR_RS21580: AZOBR_RS21580 - hypothetical protein, at 1,617,952 to 1,618,185
_RS21580
Position (kb) 1616
1617
1618 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 1615.133 kb on + strand, within AZOBR_RS21565 at 1615.133 kb on + strand, within AZOBR_RS21565 at 1615.134 kb on - strand, within AZOBR_RS21565 at 1615.134 kb on - strand, within AZOBR_RS21565 at 1615.730 kb on + strand, within AZOBR_RS21565 at 1615.790 kb on + strand, within AZOBR_RS21565 at 1615.790 kb on + strand, within AZOBR_RS21565 at 1615.887 kb on - strand, within AZOBR_RS21565 at 1616.010 kb on - strand at 1616.291 kb on + strand, within AZOBR_RS21570 at 1616.291 kb on + strand, within AZOBR_RS21570 at 1617.002 kb on + strand, within AZOBR_RS21570 at 1617.003 kb on - strand, within AZOBR_RS21570 at 1617.696 kb on + strand, within AZOBR_RS21575 at 1617.697 kb on - strand, within AZOBR_RS21575 at 1617.700 kb on + strand, within AZOBR_RS21575
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 1,615,133 + AZOBR_RS21565 0.34 -1.2 1,615,133 + AZOBR_RS21565 0.34 -3.6 1,615,134 - AZOBR_RS21565 0.35 -1.9 1,615,134 - AZOBR_RS21565 0.35 -0.5 1,615,730 + AZOBR_RS21565 0.78 -0.6 1,615,790 + AZOBR_RS21565 0.82 -4.0 1,615,790 + AZOBR_RS21565 0.82 -0.4 1,615,887 - AZOBR_RS21565 0.89 +0.1 1,616,010 - -1.7 1,616,291 + AZOBR_RS21570 0.15 -0.1 1,616,291 + AZOBR_RS21570 0.15 -1.2 1,617,002 + AZOBR_RS21570 0.83 -1.5 1,617,003 - AZOBR_RS21570 0.83 -2.1 1,617,696 + AZOBR_RS21575 0.68 -2.5 1,617,697 - AZOBR_RS21575 0.68 +1.0 1,617,700 + AZOBR_RS21575 0.69 -2.5
Or see this region's nucleotide sequence