Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS18865

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS18860 and AZOBR_RS18865 are separated by 112 nucleotidesAZOBR_RS18865 and AZOBR_RS18870 are separated by 16 nucleotides AZOBR_RS18860: AZOBR_RS18860 - hypothetical protein, at 1,002,189 to 1,003,088 _RS18860 AZOBR_RS18865: AZOBR_RS18865 - ABC transporter ATP-binding protein, at 1,003,201 to 1,003,932 _RS18865 AZOBR_RS18870: AZOBR_RS18870 - RNA polymerase sigma54 factor, at 1,003,949 to 1,005,526 _RS18870 Position (kb) 1003 1004Strain fitness (log2 ratio) -3 -2 -1 0 1at 1003.931 kb on - strandat 1004.313 kb on - strand, within AZOBR_RS18870at 1004.313 kb on - strand, within AZOBR_RS18870at 1004.361 kb on - strand, within AZOBR_RS18870

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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1,003,931 - -3.4
1,004,313 - AZOBR_RS18870 0.23 -1.6
1,004,313 - AZOBR_RS18870 0.23 -1.3
1,004,361 - AZOBR_RS18870 0.26 -3.3

Or see this region's nucleotide sequence