Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS04430 and AZOBR_RS04435 are separated by 273 nucleotides AZOBR_RS04435 and AZOBR_RS04440 are separated by 166 nucleotides AZOBR_RS04440 and AZOBR_RS04445 are separated by 101 nucleotides
AZOBR_RS04430: AZOBR_RS04430 - hypothetical protein, at 928,547 to 929,164
_RS04430
AZOBR_RS04435: AZOBR_RS04435 - bacterioferritin, at 929,438 to 929,914
_RS04435
AZOBR_RS04440: AZOBR_RS04440 - hypothetical protein, at 930,081 to 930,338
_RS04440
AZOBR_RS04445: AZOBR_RS04445 - glycosyl transferase family 51, at 930,440 to 933,466
_RS04445
Position (kb) 929
930 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 928.492 kb on + strand at 928.492 kb on + strand at 928.492 kb on + strand at 928.625 kb on + strand, within AZOBR_RS04430 at 928.790 kb on + strand, within AZOBR_RS04430 at 928.831 kb on + strand, within AZOBR_RS04430 at 928.937 kb on + strand, within AZOBR_RS04430 at 928.944 kb on + strand, within AZOBR_RS04430 at 928.982 kb on + strand, within AZOBR_RS04430 at 929.043 kb on - strand, within AZOBR_RS04430 at 929.103 kb on - strand at 929.103 kb on - strand at 929.107 kb on + strand at 929.108 kb on - strand at 929.221 kb on + strand at 929.316 kb on - strand at 929.722 kb on + strand, within AZOBR_RS04435 at 929.722 kb on + strand, within AZOBR_RS04435 at 929.778 kb on - strand, within AZOBR_RS04435 at 929.778 kb on - strand at 929.882 kb on + strand at 929.900 kb on + strand at 929.901 kb on - strand at 929.901 kb on - strand at 930.065 kb on + strand at 930.065 kb on + strand at 930.065 kb on + strand at 930.561 kb on + strand at 930.562 kb on - strand at 930.562 kb on - strand at 930.625 kb on - strand at 930.625 kb on - strand at 930.687 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 928,492 + -1.5 928,492 + -1.0 928,492 + -0.1 928,625 + AZOBR_RS04430 0.13 +1.4 928,790 + AZOBR_RS04430 0.39 +0.5 928,831 + AZOBR_RS04430 0.46 -4.0 928,937 + AZOBR_RS04430 0.63 -1.4 928,944 + AZOBR_RS04430 0.64 +1.5 928,982 + AZOBR_RS04430 0.70 +1.5 929,043 - AZOBR_RS04430 0.80 -0.3 929,103 - +0.1 929,103 - +1.2 929,107 + +1.1 929,108 - -0.4 929,221 + -0.6 929,316 - +0.4 929,722 + AZOBR_RS04435 0.60 -3.5 929,722 + AZOBR_RS04435 0.60 -0.8 929,778 - AZOBR_RS04435 0.71 -0.1 929,778 - -0.7 929,882 + +1.4 929,900 + +0.3 929,901 - -0.4 929,901 - +0.1 930,065 + -0.4 930,065 + +2.2 930,065 + +2.0 930,561 + +1.0 930,562 - -0.1 930,562 - +1.2 930,625 - +0.1 930,625 - +0.0 930,687 + -0.7
Or see this region's nucleotide sequence