Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS01770 and AZOBR_RS01775 overlap by 8 nucleotides AZOBR_RS01775 and AZOBR_RS01780 are separated by 41 nucleotides AZOBR_RS01780 and AZOBR_RS01785 are separated by 21 nucleotides AZOBR_RS01785 and AZOBR_RS01790 are separated by 40 nucleotides
AZOBR_RS01770: AZOBR_RS01770 - dephospho-CoA kinase, at 360,488 to 361,132
_RS01770
AZOBR_RS01775: AZOBR_RS01775 - DNA polymerase III subunit epsilon, at 361,125 to 361,802
_RS01775
AZOBR_RS01780: AZOBR_RS01780 - quinone oxidoreductase, at 361,844 to 362,818
_RS01780
AZOBR_RS01785: AZOBR_RS01785 - cysteine methyltransferase, at 362,840 to 363,325
_RS01785
AZOBR_RS01790: AZOBR_RS01790 - hypothetical protein, at 363,366 to 365,384
_RS01790
Position (kb) 361
362
363 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 361.103 kb on + strand at 361.103 kb on + strand at 361.248 kb on + strand, within AZOBR_RS01775 at 361.249 kb on - strand, within AZOBR_RS01775 at 361.569 kb on + strand, within AZOBR_RS01775 at 361.612 kb on - strand, within AZOBR_RS01775 at 361.612 kb on - strand, within AZOBR_RS01775 at 361.612 kb on - strand, within AZOBR_RS01775 at 361.612 kb on - strand, within AZOBR_RS01775 at 361.957 kb on + strand, within AZOBR_RS01780 at 361.957 kb on + strand, within AZOBR_RS01780 at 361.958 kb on - strand, within AZOBR_RS01780 at 362.016 kb on + strand, within AZOBR_RS01780 at 362.016 kb on + strand, within AZOBR_RS01780 at 362.017 kb on - strand, within AZOBR_RS01780 at 362.017 kb on - strand, within AZOBR_RS01780 at 362.043 kb on + strand, within AZOBR_RS01780 at 362.043 kb on + strand, within AZOBR_RS01780 at 362.044 kb on - strand, within AZOBR_RS01780 at 362.044 kb on - strand, within AZOBR_RS01780 at 362.044 kb on - strand, within AZOBR_RS01780 at 362.044 kb on - strand, within AZOBR_RS01780 at 362.119 kb on + strand, within AZOBR_RS01780 at 362.119 kb on + strand at 362.181 kb on + strand, within AZOBR_RS01780 at 362.182 kb on - strand, within AZOBR_RS01780 at 362.182 kb on - strand, within AZOBR_RS01780 at 362.247 kb on + strand, within AZOBR_RS01780 at 362.248 kb on - strand, within AZOBR_RS01780 at 362.415 kb on + strand, within AZOBR_RS01780 at 362.416 kb on - strand, within AZOBR_RS01780 at 362.416 kb on - strand, within AZOBR_RS01780 at 362.416 kb on - strand, within AZOBR_RS01780 at 362.416 kb on - strand, within AZOBR_RS01780 at 362.416 kb on - strand, within AZOBR_RS01780 at 362.416 kb on - strand, within AZOBR_RS01780 at 362.538 kb on + strand, within AZOBR_RS01780 at 362.559 kb on + strand, within AZOBR_RS01780 at 362.560 kb on - strand, within AZOBR_RS01780 at 362.664 kb on + strand, within AZOBR_RS01780 at 362.664 kb on + strand, within AZOBR_RS01780 at 362.665 kb on - strand, within AZOBR_RS01780 at 362.665 kb on - strand, within AZOBR_RS01780 at 362.682 kb on + strand, within AZOBR_RS01780 at 362.682 kb on + strand, within AZOBR_RS01780 at 362.682 kb on + strand, within AZOBR_RS01780 at 362.683 kb on - strand, within AZOBR_RS01780 at 362.683 kb on - strand, within AZOBR_RS01780 at 362.683 kb on - strand, within AZOBR_RS01780 at 362.683 kb on - strand, within AZOBR_RS01780 at 362.683 kb on - strand, within AZOBR_RS01780 at 362.683 kb on - strand, within AZOBR_RS01780 at 362.694 kb on + strand, within AZOBR_RS01780 at 362.694 kb on + strand, within AZOBR_RS01780 at 362.694 kb on + strand, within AZOBR_RS01780 at 362.694 kb on + strand, within AZOBR_RS01780 at 362.694 kb on + strand, within AZOBR_RS01780 at 362.695 kb on - strand, within AZOBR_RS01780 at 362.695 kb on - strand, within AZOBR_RS01780 at 362.695 kb on - strand, within AZOBR_RS01780 at 362.695 kb on - strand, within AZOBR_RS01780 at 362.790 kb on + strand at 362.790 kb on + strand at 362.791 kb on - strand at 362.843 kb on + strand at 363.190 kb on - strand, within AZOBR_RS01785 at 363.442 kb on + strand at 363.442 kb on + strand at 363.442 kb on + strand at 363.443 kb on - strand at 363.443 kb on - strand at 363.443 kb on - strand at 363.649 kb on + strand, within AZOBR_RS01790 at 363.650 kb on - strand, within AZOBR_RS01790
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 361,103 + -2.7 361,103 + +0.3 361,248 + AZOBR_RS01775 0.18 -1.2 361,249 - AZOBR_RS01775 0.18 -2.3 361,569 + AZOBR_RS01775 0.65 -1.7 361,612 - AZOBR_RS01775 0.72 -2.7 361,612 - AZOBR_RS01775 0.72 -0.4 361,612 - AZOBR_RS01775 0.72 -3.2 361,612 - AZOBR_RS01775 0.72 -4.3 361,957 + AZOBR_RS01780 0.12 -0.9 361,957 + AZOBR_RS01780 0.12 -1.8 361,958 - AZOBR_RS01780 0.12 +1.8 362,016 + AZOBR_RS01780 0.18 +1.6 362,016 + AZOBR_RS01780 0.18 -1.6 362,017 - AZOBR_RS01780 0.18 -3.3 362,017 - AZOBR_RS01780 0.18 +0.5 362,043 + AZOBR_RS01780 0.20 +1.0 362,043 + AZOBR_RS01780 0.20 +0.5 362,044 - AZOBR_RS01780 0.21 +1.5 362,044 - AZOBR_RS01780 0.21 +0.3 362,044 - AZOBR_RS01780 0.21 +0.2 362,044 - AZOBR_RS01780 0.21 +0.3 362,119 + AZOBR_RS01780 0.28 -2.4 362,119 + -1.2 362,181 + AZOBR_RS01780 0.35 +1.9 362,182 - AZOBR_RS01780 0.35 +0.5 362,182 - AZOBR_RS01780 0.35 -2.9 362,247 + AZOBR_RS01780 0.41 -3.3 362,248 - AZOBR_RS01780 0.41 -3.9 362,415 + AZOBR_RS01780 0.59 +0.8 362,416 - AZOBR_RS01780 0.59 +0.4 362,416 - AZOBR_RS01780 0.59 -1.6 362,416 - AZOBR_RS01780 0.59 -0.0 362,416 - AZOBR_RS01780 0.59 +1.7 362,416 - AZOBR_RS01780 0.59 -0.5 362,416 - AZOBR_RS01780 0.59 +0.1 362,538 + AZOBR_RS01780 0.71 +1.0 362,559 + AZOBR_RS01780 0.73 -3.7 362,560 - AZOBR_RS01780 0.73 -0.2 362,664 + AZOBR_RS01780 0.84 +0.6 362,664 + AZOBR_RS01780 0.84 +0.6 362,665 - AZOBR_RS01780 0.84 -2.0 362,665 - AZOBR_RS01780 0.84 -2.7 362,682 + AZOBR_RS01780 0.86 -1.3 362,682 + AZOBR_RS01780 0.86 -2.6 362,682 + AZOBR_RS01780 0.86 +0.3 362,683 - AZOBR_RS01780 0.86 -0.2 362,683 - AZOBR_RS01780 0.86 +2.1 362,683 - AZOBR_RS01780 0.86 +0.2 362,683 - AZOBR_RS01780 0.86 +0.7 362,683 - AZOBR_RS01780 0.86 -3.4 362,683 - AZOBR_RS01780 0.86 -0.4 362,694 + AZOBR_RS01780 0.87 -1.8 362,694 + AZOBR_RS01780 0.87 +2.0 362,694 + AZOBR_RS01780 0.87 +0.8 362,694 + AZOBR_RS01780 0.87 -0.4 362,694 + AZOBR_RS01780 0.87 -2.9 362,695 - AZOBR_RS01780 0.87 -2.9 362,695 - AZOBR_RS01780 0.87 -0.4 362,695 - AZOBR_RS01780 0.87 -0.0 362,695 - AZOBR_RS01780 0.87 -0.6 362,790 + +1.3 362,790 + -1.5 362,791 - +0.7 362,843 + -1.0 363,190 - AZOBR_RS01785 0.72 -1.2 363,442 + +0.8 363,442 + -2.4 363,442 + -1.1 363,443 - -3.0 363,443 - -1.7 363,443 - -0.0 363,649 + AZOBR_RS01790 0.14 -0.4 363,650 - AZOBR_RS01790 0.14 +0.3
Or see this region's nucleotide sequence