Experiment: Fusidic 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_29805 and AO356_29810 overlap by 4 nucleotides AO356_29810 and AO356_29815 are separated by 32 nucleotides
AO356_29805: AO356_29805 - FAD-dependent oxidoreductase, at 6,929,894 to 6,931,318
_29805
AO356_29810: AO356_29810 - cupin, at 6,931,315 to 6,931,656
_29810
AO356_29815: AO356_29815 - spermidine/putrescine ABC transporter substrate-binding protein, at 6,931,689 to 6,932,774
_29815
Position (kb)
6931
6932 Strain fitness (log2 ratio)
-1
0
1 at 6930.405 kb on + strand, within AO356_29805 at 6930.405 kb on + strand, within AO356_29805 at 6930.405 kb on + strand, within AO356_29805 at 6930.406 kb on - strand, within AO356_29805 at 6930.423 kb on - strand, within AO356_29805 at 6930.474 kb on + strand, within AO356_29805 at 6930.510 kb on + strand, within AO356_29805 at 6930.511 kb on - strand, within AO356_29805 at 6930.614 kb on + strand, within AO356_29805 at 6930.699 kb on + strand, within AO356_29805 at 6930.699 kb on + strand, within AO356_29805 at 6930.699 kb on + strand, within AO356_29805 at 6930.700 kb on - strand, within AO356_29805 at 6930.700 kb on - strand, within AO356_29805 at 6930.761 kb on + strand, within AO356_29805 at 6930.761 kb on + strand, within AO356_29805 at 6930.762 kb on - strand, within AO356_29805 at 6930.887 kb on - strand, within AO356_29805 at 6931.033 kb on - strand, within AO356_29805 at 6931.557 kb on - strand, within AO356_29810 at 6931.557 kb on - strand, within AO356_29810 at 6931.557 kb on - strand, within AO356_29810 at 6931.560 kb on + strand, within AO356_29810 at 6931.560 kb on + strand, within AO356_29810 at 6931.560 kb on + strand, within AO356_29810 at 6931.616 kb on + strand, within AO356_29810 at 6931.616 kb on + strand, within AO356_29810 at 6931.616 kb on + strand, within AO356_29810 at 6931.617 kb on - strand, within AO356_29810 at 6931.617 kb on - strand, within AO356_29810 at 6931.639 kb on + strand at 6931.639 kb on + strand at 6931.640 kb on - strand at 6931.678 kb on + strand at 6931.679 kb on - strand at 6931.785 kb on + strand at 6931.786 kb on - strand at 6931.842 kb on + strand, within AO356_29815 at 6931.852 kb on - strand, within AO356_29815 at 6931.903 kb on - strand, within AO356_29815 at 6931.903 kb on - strand, within AO356_29815 at 6932.128 kb on + strand, within AO356_29815 at 6932.129 kb on - strand, within AO356_29815 at 6932.129 kb on - strand, within AO356_29815 at 6932.241 kb on + strand, within AO356_29815 at 6932.241 kb on + strand, within AO356_29815 at 6932.242 kb on - strand, within AO356_29815 at 6932.242 kb on - strand, within AO356_29815 at 6932.242 kb on - strand, within AO356_29815 at 6932.302 kb on + strand, within AO356_29815 at 6932.303 kb on - strand, within AO356_29815 at 6932.320 kb on - strand at 6932.328 kb on + strand, within AO356_29815 at 6932.329 kb on - strand, within AO356_29815 at 6932.329 kb on - strand, within AO356_29815 at 6932.346 kb on + strand, within AO356_29815 at 6932.347 kb on - strand, within AO356_29815 at 6932.457 kb on + strand, within AO356_29815 at 6932.457 kb on + strand, within AO356_29815 at 6932.458 kb on - strand, within AO356_29815 at 6932.458 kb on - strand, within AO356_29815 at 6932.553 kb on + strand, within AO356_29815 at 6932.553 kb on + strand, within AO356_29815 at 6932.602 kb on - strand, within AO356_29815
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.1 mg/ml remove 6,930,405 + AO356_29805 0.36 -0.0 6,930,405 + AO356_29805 0.36 +0.3 6,930,405 + AO356_29805 0.36 -0.6 6,930,406 - AO356_29805 0.36 +0.1 6,930,423 - AO356_29805 0.37 -0.9 6,930,474 + AO356_29805 0.41 -0.2 6,930,510 + AO356_29805 0.43 +0.4 6,930,511 - AO356_29805 0.43 +0.1 6,930,614 + AO356_29805 0.51 +0.3 6,930,699 + AO356_29805 0.56 -0.5 6,930,699 + AO356_29805 0.56 -0.4 6,930,699 + AO356_29805 0.56 +0.3 6,930,700 - AO356_29805 0.57 +1.6 6,930,700 - AO356_29805 0.57 -0.2 6,930,761 + AO356_29805 0.61 +0.9 6,930,761 + AO356_29805 0.61 +0.6 6,930,762 - AO356_29805 0.61 +0.2 6,930,887 - AO356_29805 0.70 -0.1 6,931,033 - AO356_29805 0.80 -0.1 6,931,557 - AO356_29810 0.71 -0.6 6,931,557 - AO356_29810 0.71 +0.6 6,931,557 - AO356_29810 0.71 -0.0 6,931,560 + AO356_29810 0.72 +0.5 6,931,560 + AO356_29810 0.72 -0.1 6,931,560 + AO356_29810 0.72 +0.8 6,931,616 + AO356_29810 0.88 -0.9 6,931,616 + AO356_29810 0.88 -0.1 6,931,616 + AO356_29810 0.88 +0.8 6,931,617 - AO356_29810 0.88 +1.0 6,931,617 - AO356_29810 0.88 +0.5 6,931,639 + -1.7 6,931,639 + +0.8 6,931,640 - +0.3 6,931,678 + -0.5 6,931,679 - +0.0 6,931,785 + -1.1 6,931,786 - +0.1 6,931,842 + AO356_29815 0.14 -0.8 6,931,852 - AO356_29815 0.15 +0.1 6,931,903 - AO356_29815 0.20 +1.2 6,931,903 - AO356_29815 0.20 +0.3 6,932,128 + AO356_29815 0.40 +0.7 6,932,129 - AO356_29815 0.41 +0.7 6,932,129 - AO356_29815 0.41 -0.1 6,932,241 + AO356_29815 0.51 +0.3 6,932,241 + AO356_29815 0.51 +0.3 6,932,242 - AO356_29815 0.51 -0.0 6,932,242 - AO356_29815 0.51 +1.3 6,932,242 - AO356_29815 0.51 -0.8 6,932,302 + AO356_29815 0.56 -0.6 6,932,303 - AO356_29815 0.57 -0.1 6,932,320 - +0.0 6,932,328 + AO356_29815 0.59 +0.2 6,932,329 - AO356_29815 0.59 +0.4 6,932,329 - AO356_29815 0.59 -0.0 6,932,346 + AO356_29815 0.60 +1.5 6,932,347 - AO356_29815 0.61 -1.0 6,932,457 + AO356_29815 0.71 +0.5 6,932,457 + AO356_29815 0.71 -0.3 6,932,458 - AO356_29815 0.71 -0.4 6,932,458 - AO356_29815 0.71 +0.0 6,932,553 + AO356_29815 0.80 -0.2 6,932,553 + AO356_29815 0.80 -0.2 6,932,602 - AO356_29815 0.84 -0.2
Or see this region's nucleotide sequence