Experiment: Fusidic 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_24920 and AO356_24925 are separated by 12 nucleotides AO356_24925 and AO356_24930 overlap by 8 nucleotides AO356_24930 and AO356_24935 are separated by 10 nucleotides
AO356_24920: AO356_24920 - amino acid ABC transporter, at 5,646,551 to 5,647,201
_24920
AO356_24925: AO356_24925 - ABC transporter permease, at 5,647,214 to 5,647,879
_24925
AO356_24930: AO356_24930 - hypothetical protein, at 5,647,872 to 5,649,647
_24930
AO356_24935: AO356_24935 - amino acid ABC transporter substrate-binding protein, at 5,649,658 to 5,650,476
_24935
Position (kb)
5647
5648
5649
5650 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 5646.903 kb on + strand, within AO356_24920 at 5646.903 kb on + strand, within AO356_24920 at 5646.915 kb on + strand, within AO356_24920 at 5646.931 kb on + strand, within AO356_24920 at 5647.164 kb on + strand at 5647.193 kb on - strand at 5647.281 kb on + strand, within AO356_24925 at 5647.282 kb on - strand, within AO356_24925 at 5647.335 kb on + strand, within AO356_24925 at 5647.335 kb on + strand, within AO356_24925 at 5647.336 kb on - strand, within AO356_24925 at 5647.336 kb on - strand, within AO356_24925 at 5647.336 kb on - strand, within AO356_24925 at 5647.336 kb on - strand, within AO356_24925 at 5647.647 kb on + strand, within AO356_24925 at 5647.656 kb on + strand, within AO356_24925 at 5647.657 kb on - strand, within AO356_24925 at 5647.657 kb on - strand, within AO356_24925 at 5647.869 kb on + strand at 5648.137 kb on + strand, within AO356_24930 at 5648.138 kb on - strand, within AO356_24930 at 5648.198 kb on - strand, within AO356_24930 at 5648.198 kb on - strand, within AO356_24930 at 5648.515 kb on - strand, within AO356_24930 at 5648.737 kb on + strand, within AO356_24930 at 5648.738 kb on - strand, within AO356_24930 at 5648.845 kb on + strand, within AO356_24930 at 5648.845 kb on + strand, within AO356_24930 at 5648.846 kb on - strand, within AO356_24930 at 5649.010 kb on + strand, within AO356_24930 at 5649.010 kb on + strand, within AO356_24930 at 5649.011 kb on - strand, within AO356_24930 at 5649.011 kb on - strand, within AO356_24930 at 5649.045 kb on + strand, within AO356_24930 at 5649.046 kb on - strand, within AO356_24930 at 5649.046 kb on - strand, within AO356_24930 at 5649.666 kb on - strand at 5649.666 kb on - strand at 5649.666 kb on - strand at 5649.776 kb on + strand, within AO356_24935 at 5649.834 kb on - strand, within AO356_24935 at 5649.866 kb on + strand, within AO356_24935 at 5649.866 kb on + strand, within AO356_24935 at 5649.866 kb on + strand, within AO356_24935 at 5650.028 kb on + strand, within AO356_24935 at 5650.073 kb on + strand, within AO356_24935 at 5650.073 kb on + strand, within AO356_24935 at 5650.127 kb on + strand, within AO356_24935 at 5650.258 kb on + strand, within AO356_24935 at 5650.510 kb on - strand at 5650.579 kb on + strand at 5650.580 kb on - strand at 5650.601 kb on + strand at 5650.601 kb on + strand at 5650.602 kb on - strand at 5650.602 kb on - strand at 5650.629 kb on - strand at 5650.644 kb on + strand at 5650.644 kb on + strand at 5650.644 kb on + strand at 5650.645 kb on - strand at 5650.645 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.1 mg/ml remove 5,646,903 + AO356_24920 0.54 -1.9 5,646,903 + AO356_24920 0.54 +0.4 5,646,915 + AO356_24920 0.56 +1.1 5,646,931 + AO356_24920 0.58 -0.9 5,647,164 + -0.3 5,647,193 - -0.4 5,647,281 + AO356_24925 0.10 -0.4 5,647,282 - AO356_24925 0.10 +0.2 5,647,335 + AO356_24925 0.18 -1.6 5,647,335 + AO356_24925 0.18 +0.4 5,647,336 - AO356_24925 0.18 -0.9 5,647,336 - AO356_24925 0.18 -0.1 5,647,336 - AO356_24925 0.18 -0.4 5,647,336 - AO356_24925 0.18 +0.6 5,647,647 + AO356_24925 0.65 +0.5 5,647,656 + AO356_24925 0.66 +0.7 5,647,657 - AO356_24925 0.67 -0.2 5,647,657 - AO356_24925 0.67 +0.5 5,647,869 + -0.1 5,648,137 + AO356_24930 0.15 +0.1 5,648,138 - AO356_24930 0.15 -0.5 5,648,198 - AO356_24930 0.18 -2.9 5,648,198 - AO356_24930 0.18 +0.9 5,648,515 - AO356_24930 0.36 -0.5 5,648,737 + AO356_24930 0.49 +0.7 5,648,738 - AO356_24930 0.49 -0.1 5,648,845 + AO356_24930 0.55 +0.2 5,648,845 + AO356_24930 0.55 +0.2 5,648,846 - AO356_24930 0.55 -0.7 5,649,010 + AO356_24930 0.64 +0.2 5,649,010 + AO356_24930 0.64 -0.3 5,649,011 - AO356_24930 0.64 -1.5 5,649,011 - AO356_24930 0.64 -0.6 5,649,045 + AO356_24930 0.66 +0.6 5,649,046 - AO356_24930 0.66 +0.4 5,649,046 - AO356_24930 0.66 +0.5 5,649,666 - +1.0 5,649,666 - +0.5 5,649,666 - +0.5 5,649,776 + AO356_24935 0.14 +0.5 5,649,834 - AO356_24935 0.21 -0.1 5,649,866 + AO356_24935 0.25 -0.1 5,649,866 + AO356_24935 0.25 -0.2 5,649,866 + AO356_24935 0.25 -0.3 5,650,028 + AO356_24935 0.45 -0.7 5,650,073 + AO356_24935 0.51 +0.1 5,650,073 + AO356_24935 0.51 +0.3 5,650,127 + AO356_24935 0.57 +0.3 5,650,258 + AO356_24935 0.73 +0.4 5,650,510 - -0.5 5,650,579 + +0.7 5,650,580 - -0.4 5,650,601 + -0.4 5,650,601 + -0.1 5,650,602 - +0.8 5,650,602 - -0.1 5,650,629 - +0.2 5,650,644 + +1.0 5,650,644 + -0.2 5,650,644 + -0.9 5,650,645 - +0.7 5,650,645 - +4.8
Or see this region's nucleotide sequence