Experiment: Fusidic 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_22080 and AO356_22085 are separated by 456 nucleotides AO356_22085 and AO356_22090 are separated by 242 nucleotides AO356_22090 and AO356_22095 overlap by 8 nucleotides
AO356_22080: AO356_22080 - isocitrate lyase, at 4,942,793 to 4,944,118
_22080
AO356_22085: AO356_22085 - secretin, at 4,944,575 to 4,945,336
_22085
AO356_22090: AO356_22090 - GNAT family acetyltransferase, at 4,945,579 to 4,946,004
_22090
AO356_22095: AO356_22095 - cupin, at 4,945,997 to 4,947,163
_22095
Position (kb)
4944
4945
4946 Strain fitness (log2 ratio)
-1
0
1 at 4943.656 kb on - strand, within AO356_22080 at 4943.656 kb on - strand, within AO356_22080 at 4943.656 kb on - strand, within AO356_22080 at 4943.779 kb on - strand, within AO356_22080 at 4943.779 kb on - strand, within AO356_22080 at 4943.779 kb on - strand, within AO356_22080 at 4943.829 kb on + strand, within AO356_22080 at 4943.829 kb on + strand, within AO356_22080 at 4943.829 kb on + strand, within AO356_22080 at 4943.830 kb on - strand, within AO356_22080 at 4943.830 kb on - strand, within AO356_22080 at 4943.830 kb on - strand, within AO356_22080 at 4944.033 kb on + strand at 4944.034 kb on - strand at 4944.124 kb on + strand at 4944.124 kb on + strand at 4944.125 kb on - strand at 4944.125 kb on - strand at 4944.125 kb on - strand at 4944.139 kb on - strand at 4944.184 kb on + strand at 4944.288 kb on + strand at 4944.288 kb on + strand at 4944.288 kb on + strand at 4944.291 kb on + strand at 4944.292 kb on - strand at 4944.316 kb on - strand at 4944.316 kb on - strand at 4944.319 kb on + strand at 4944.319 kb on + strand at 4944.319 kb on + strand at 4944.319 kb on + strand at 4944.319 kb on + strand at 4944.319 kb on + strand at 4944.320 kb on - strand at 4944.320 kb on - strand at 4944.320 kb on - strand at 4944.320 kb on - strand at 4944.323 kb on + strand at 4944.323 kb on + strand at 4944.324 kb on - strand at 4944.324 kb on - strand at 4944.324 kb on - strand at 4944.415 kb on - strand at 4944.415 kb on - strand at 4944.415 kb on - strand at 4944.531 kb on + strand at 4944.531 kb on + strand at 4944.531 kb on + strand at 4944.531 kb on + strand at 4944.532 kb on - strand at 4944.544 kb on + strand at 4944.544 kb on + strand at 4944.547 kb on + strand at 4944.633 kb on + strand at 4944.633 kb on + strand at 4944.633 kb on + strand at 4944.634 kb on - strand at 4944.634 kb on - strand at 4944.634 kb on - strand at 4944.746 kb on + strand, within AO356_22085 at 4944.747 kb on - strand, within AO356_22085 at 4944.831 kb on + strand, within AO356_22085 at 4944.831 kb on + strand, within AO356_22085 at 4944.831 kb on + strand, within AO356_22085 at 4944.832 kb on - strand, within AO356_22085 at 4944.832 kb on - strand, within AO356_22085 at 4944.882 kb on + strand, within AO356_22085 at 4944.882 kb on + strand, within AO356_22085 at 4944.882 kb on + strand, within AO356_22085 at 4944.883 kb on - strand, within AO356_22085 at 4944.883 kb on - strand, within AO356_22085 at 4944.883 kb on - strand, within AO356_22085 at 4944.901 kb on + strand, within AO356_22085 at 4944.902 kb on - strand, within AO356_22085 at 4944.923 kb on + strand, within AO356_22085 at 4944.924 kb on - strand, within AO356_22085 at 4944.968 kb on + strand, within AO356_22085 at 4944.968 kb on + strand, within AO356_22085 at 4944.969 kb on - strand, within AO356_22085 at 4945.042 kb on - strand, within AO356_22085 at 4945.251 kb on + strand, within AO356_22085 at 4945.251 kb on + strand, within AO356_22085 at 4945.252 kb on - strand, within AO356_22085 at 4945.328 kb on + strand at 4945.328 kb on + strand at 4945.328 kb on + strand at 4945.329 kb on - strand at 4945.366 kb on + strand at 4945.366 kb on + strand at 4945.407 kb on + strand at 4945.408 kb on - strand at 4945.408 kb on - strand at 4945.408 kb on - strand at 4945.408 kb on - strand at 4945.408 kb on - strand at 4945.509 kb on + strand at 4945.509 kb on + strand at 4945.510 kb on - strand at 4945.510 kb on - strand at 4945.664 kb on + strand, within AO356_22090 at 4945.664 kb on + strand, within AO356_22090 at 4945.665 kb on - strand, within AO356_22090 at 4945.931 kb on - strand, within AO356_22090 at 4945.931 kb on - strand, within AO356_22090 at 4945.931 kb on - strand, within AO356_22090 at 4945.931 kb on - strand, within AO356_22090 at 4945.999 kb on - strand at 4946.152 kb on - strand, within AO356_22095 at 4946.288 kb on + strand, within AO356_22095
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.1 mg/ml remove 4,943,656 - AO356_22080 0.65 +0.4 4,943,656 - AO356_22080 0.65 +0.2 4,943,656 - AO356_22080 0.65 +0.1 4,943,779 - AO356_22080 0.74 +0.7 4,943,779 - AO356_22080 0.74 +1.1 4,943,779 - AO356_22080 0.74 +0.2 4,943,829 + AO356_22080 0.78 +0.3 4,943,829 + AO356_22080 0.78 +1.3 4,943,829 + AO356_22080 0.78 -0.4 4,943,830 - AO356_22080 0.78 -1.4 4,943,830 - AO356_22080 0.78 +0.3 4,943,830 - AO356_22080 0.78 +1.0 4,944,033 + -1.0 4,944,034 - +0.2 4,944,124 + -1.5 4,944,124 + +0.2 4,944,125 - -0.2 4,944,125 - +1.1 4,944,125 - -0.3 4,944,139 - +0.2 4,944,184 + +0.2 4,944,288 + +0.2 4,944,288 + +0.5 4,944,288 + -0.1 4,944,291 + +0.8 4,944,292 - +0.2 4,944,316 - +0.1 4,944,316 - -0.0 4,944,319 + -0.4 4,944,319 + -0.5 4,944,319 + -0.2 4,944,319 + -0.4 4,944,319 + -0.5 4,944,319 + +0.5 4,944,320 - -0.0 4,944,320 - +0.4 4,944,320 - +0.1 4,944,320 - -0.7 4,944,323 + +0.1 4,944,323 + -0.5 4,944,324 - -0.5 4,944,324 - +0.2 4,944,324 - -0.2 4,944,415 - +0.1 4,944,415 - +0.2 4,944,415 - -0.3 4,944,531 + +0.3 4,944,531 + +0.8 4,944,531 + -0.5 4,944,531 + +0.2 4,944,532 - +1.5 4,944,544 + -0.6 4,944,544 + +1.2 4,944,547 + +0.4 4,944,633 + -0.0 4,944,633 + -0.5 4,944,633 + +0.2 4,944,634 - -0.5 4,944,634 - -0.8 4,944,634 - +0.3 4,944,746 + AO356_22085 0.22 -0.0 4,944,747 - AO356_22085 0.23 -0.4 4,944,831 + AO356_22085 0.34 -1.3 4,944,831 + AO356_22085 0.34 -0.0 4,944,831 + AO356_22085 0.34 -1.7 4,944,832 - AO356_22085 0.34 -0.3 4,944,832 - AO356_22085 0.34 -0.5 4,944,882 + AO356_22085 0.40 +0.4 4,944,882 + AO356_22085 0.40 -0.6 4,944,882 + AO356_22085 0.40 -0.5 4,944,883 - AO356_22085 0.40 +0.8 4,944,883 - AO356_22085 0.40 +0.8 4,944,883 - AO356_22085 0.40 +0.9 4,944,901 + AO356_22085 0.43 -1.2 4,944,902 - AO356_22085 0.43 -1.5 4,944,923 + AO356_22085 0.46 +0.8 4,944,924 - AO356_22085 0.46 -1.3 4,944,968 + AO356_22085 0.52 +0.2 4,944,968 + AO356_22085 0.52 +0.1 4,944,969 - AO356_22085 0.52 -0.3 4,945,042 - AO356_22085 0.61 -0.1 4,945,251 + AO356_22085 0.89 +0.3 4,945,251 + AO356_22085 0.89 +0.8 4,945,252 - AO356_22085 0.89 -0.3 4,945,328 + +0.5 4,945,328 + -0.5 4,945,328 + -0.4 4,945,329 - +0.4 4,945,366 + -1.1 4,945,366 + -0.0 4,945,407 + +0.2 4,945,408 - +0.2 4,945,408 - +0.1 4,945,408 - -0.5 4,945,408 - -0.2 4,945,408 - +0.4 4,945,509 + -1.1 4,945,509 + -0.3 4,945,510 - +1.4 4,945,510 - -0.5 4,945,664 + AO356_22090 0.20 -1.1 4,945,664 + AO356_22090 0.20 -0.5 4,945,665 - AO356_22090 0.20 +0.4 4,945,931 - AO356_22090 0.83 +0.6 4,945,931 - AO356_22090 0.83 -0.0 4,945,931 - AO356_22090 0.83 -0.1 4,945,931 - AO356_22090 0.83 +0.2 4,945,999 - +0.5 4,946,152 - AO356_22095 0.13 +0.8 4,946,288 + AO356_22095 0.25 +0.2
Or see this region's nucleotide sequence