Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_22010

Experiment: Fusidic 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_22000 and AO356_22005 overlap by 1 nucleotidesAO356_22005 and AO356_22010 are separated by 261 nucleotidesAO356_22010 and AO356_22015 are separated by 7 nucleotides AO356_22000: AO356_22000 - plasmid stabilization protein, at 4,924,148 to 4,924,423 _22000 AO356_22005: AO356_22005 - CopG family transcriptional regulator, at 4,924,423 to 4,924,695 _22005 AO356_22010: AO356_22010 - NADH:ubiquinone oxidoreductase subunit N, at 4,924,957 to 4,926,420 _22010 AO356_22015: AO356_22015 - NADH:ubiquinone oxidoreductase subunit M, at 4,926,428 to 4,927,960 _22015 Position (kb) 4924 4925 4926 4927Strain fitness (log2 ratio) -1 0 1 2at 4923.984 kb on + strandat 4924.185 kb on + strand, within AO356_22000at 4924.186 kb on - strand, within AO356_22000at 4924.199 kb on + strand, within AO356_22000at 4924.200 kb on - strand, within AO356_22000at 4924.202 kb on + strand, within AO356_22000at 4924.202 kb on + strand, within AO356_22000at 4924.203 kb on - strand, within AO356_22000at 4924.328 kb on + strand, within AO356_22000at 4924.328 kb on + strand, within AO356_22000at 4924.328 kb on + strand, within AO356_22000at 4924.328 kb on + strand, within AO356_22000at 4924.328 kb on + strand, within AO356_22000at 4924.328 kb on + strand, within AO356_22000at 4924.328 kb on + strand, within AO356_22000at 4924.328 kb on + strand, within AO356_22000at 4924.329 kb on - strand, within AO356_22000at 4924.329 kb on - strand, within AO356_22000at 4924.329 kb on - strand, within AO356_22000at 4924.374 kb on + strand, within AO356_22000at 4924.375 kb on - strand, within AO356_22000at 4924.375 kb on - strand, within AO356_22000at 4924.385 kb on + strand, within AO356_22000at 4924.386 kb on - strand, within AO356_22000at 4924.561 kb on + strand, within AO356_22005at 4924.562 kb on - strand, within AO356_22005at 4924.573 kb on + strand, within AO356_22005at 4924.573 kb on + strand, within AO356_22005at 4924.574 kb on - strand, within AO356_22005at 4924.574 kb on - strand, within AO356_22005at 4924.765 kb on - strandat 4924.773 kb on - strandat 4924.788 kb on - strandat 4924.814 kb on + strandat 4924.821 kb on + strandat 4924.821 kb on + strandat 4924.867 kb on + strandat 4924.867 kb on + strandat 4924.867 kb on + strandat 4924.867 kb on + strandat 4924.867 kb on + strandat 4924.867 kb on + strandat 4924.868 kb on - strandat 4924.913 kb on - strandat 4926.963 kb on + strand, within AO356_22015

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.1 mg/ml
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4,923,984 + +0.3
4,924,185 + AO356_22000 0.13 +0.0
4,924,186 - AO356_22000 0.14 -0.9
4,924,199 + AO356_22000 0.18 +0.2
4,924,200 - AO356_22000 0.19 +0.4
4,924,202 + AO356_22000 0.20 -0.0
4,924,202 + AO356_22000 0.20 +0.6
4,924,203 - AO356_22000 0.20 +1.3
4,924,328 + AO356_22000 0.65 +0.2
4,924,328 + AO356_22000 0.65 -0.1
4,924,328 + AO356_22000 0.65 +0.7
4,924,328 + AO356_22000 0.65 +0.0
4,924,328 + AO356_22000 0.65 -0.5
4,924,328 + AO356_22000 0.65 +1.8
4,924,328 + AO356_22000 0.65 -0.4
4,924,328 + AO356_22000 0.65 +0.1
4,924,329 - AO356_22000 0.66 +0.2
4,924,329 - AO356_22000 0.66 +1.1
4,924,329 - AO356_22000 0.66 -0.5
4,924,374 + AO356_22000 0.82 +0.5
4,924,375 - AO356_22000 0.82 -0.6
4,924,375 - AO356_22000 0.82 +1.9
4,924,385 + AO356_22000 0.86 +0.2
4,924,386 - AO356_22000 0.86 +0.6
4,924,561 + AO356_22005 0.51 -1.4
4,924,562 - AO356_22005 0.51 +0.1
4,924,573 + AO356_22005 0.55 +0.6
4,924,573 + AO356_22005 0.55 -0.7
4,924,574 - AO356_22005 0.55 -0.3
4,924,574 - AO356_22005 0.55 -0.7
4,924,765 - +0.2
4,924,773 - +0.8
4,924,788 - -0.1
4,924,814 + +0.6
4,924,821 + +0.9
4,924,821 + -0.1
4,924,867 + +0.2
4,924,867 + -0.1
4,924,867 + +0.3
4,924,867 + -0.2
4,924,867 + +0.5
4,924,867 + +0.4
4,924,868 - -0.4
4,924,913 - +0.3
4,926,963 + AO356_22015 0.35 +0.2

Or see this region's nucleotide sequence