Experiment: Fusidic 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_20980 and AO356_20985 are separated by 670 nucleotides AO356_20985 and AO356_20990 are separated by 72 nucleotides AO356_20990 and AO356_20995 are separated by 30 nucleotides AO356_20995 and AO356_21000 are separated by 238 nucleotides
AO356_20980: AO356_20980 - transporter, at 4,669,127 to 4,670,017
_20980
AO356_20985: AO356_20985 - 16S ribosomal RNA, at 4,670,688 to 4,672,233
_20985
AO356_20990: AO356_20990 - tRNA-Ile, at 4,672,306 to 4,672,382
_20990
AO356_20995: AO356_20995 - tRNA-Ala, at 4,672,413 to 4,672,488
_20995
AO356_21000: AO356_21000 - 23S ribosomal RNA, at 4,672,727 to 4,675,642
_21000
Position (kb)
4670
4671
4672
4673 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4669.744 kb on + strand, within AO356_20980 at 4669.744 kb on + strand, within AO356_20980 at 4669.745 kb on - strand, within AO356_20980 at 4669.745 kb on - strand, within AO356_20980 at 4669.745 kb on - strand, within AO356_20980 at 4669.746 kb on + strand, within AO356_20980 at 4669.746 kb on + strand, within AO356_20980 at 4669.746 kb on + strand, within AO356_20980 at 4669.746 kb on + strand, within AO356_20980 at 4669.746 kb on + strand, within AO356_20980 at 4669.746 kb on + strand, within AO356_20980 at 4669.746 kb on + strand, within AO356_20980 at 4669.746 kb on + strand, within AO356_20980 at 4669.746 kb on + strand, within AO356_20980 at 4669.746 kb on + strand, within AO356_20980 at 4669.746 kb on + strand, within AO356_20980 at 4669.746 kb on + strand, within AO356_20980 at 4669.747 kb on - strand, within AO356_20980 at 4669.747 kb on - strand, within AO356_20980 at 4669.747 kb on - strand, within AO356_20980 at 4669.747 kb on - strand, within AO356_20980 at 4669.747 kb on - strand, within AO356_20980 at 4669.747 kb on - strand, within AO356_20980 at 4669.747 kb on - strand, within AO356_20980 at 4669.747 kb on - strand, within AO356_20980 at 4669.747 kb on - strand, within AO356_20980 at 4669.747 kb on - strand, within AO356_20980 at 4669.747 kb on - strand, within AO356_20980 at 4669.762 kb on + strand, within AO356_20980 at 4669.762 kb on + strand, within AO356_20980 at 4669.782 kb on + strand, within AO356_20980 at 4669.835 kb on + strand, within AO356_20980 at 4669.836 kb on - strand, within AO356_20980 at 4669.836 kb on - strand, within AO356_20980 at 4669.883 kb on - strand, within AO356_20980 at 4669.883 kb on - strand, within AO356_20980 at 4669.955 kb on + strand at 4669.956 kb on - strand at 4669.961 kb on + strand at 4669.962 kb on - strand at 4670.019 kb on - strand at 4670.019 kb on - strand at 4670.019 kb on - strand at 4670.037 kb on + strand at 4670.037 kb on + strand at 4670.038 kb on - strand at 4670.038 kb on - strand at 4670.068 kb on - strand at 4670.094 kb on - strand at 4670.095 kb on + strand at 4670.095 kb on + strand at 4670.095 kb on + strand at 4670.095 kb on + strand at 4670.096 kb on - strand at 4670.096 kb on - strand at 4670.096 kb on - strand at 4670.096 kb on - strand at 4670.096 kb on - strand at 4670.096 kb on - strand at 4670.097 kb on + strand at 4670.097 kb on + strand at 4670.097 kb on + strand at 4670.098 kb on - strand at 4670.098 kb on - strand at 4670.098 kb on - strand at 4670.107 kb on - strand at 4670.110 kb on + strand at 4670.110 kb on + strand at 4670.110 kb on + strand at 4670.110 kb on + strand at 4670.110 kb on + strand at 4670.111 kb on - strand at 4670.111 kb on - strand at 4670.111 kb on - strand at 4670.111 kb on - strand at 4670.111 kb on - strand at 4670.133 kb on + strand at 4670.289 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.1 mg/ml remove 4,669,744 + AO356_20980 0.69 +1.1 4,669,744 + AO356_20980 0.69 -0.0 4,669,745 - AO356_20980 0.69 +0.8 4,669,745 - AO356_20980 0.69 -0.4 4,669,745 - AO356_20980 0.69 +0.1 4,669,746 + AO356_20980 0.69 -0.3 4,669,746 + AO356_20980 0.69 +0.4 4,669,746 + AO356_20980 0.69 +0.5 4,669,746 + AO356_20980 0.69 +0.6 4,669,746 + AO356_20980 0.69 -0.1 4,669,746 + AO356_20980 0.69 -0.5 4,669,746 + AO356_20980 0.69 -0.3 4,669,746 + AO356_20980 0.69 -2.5 4,669,746 + AO356_20980 0.69 -0.4 4,669,746 + AO356_20980 0.69 -0.2 4,669,746 + AO356_20980 0.69 +0.3 4,669,746 + AO356_20980 0.69 +0.4 4,669,747 - AO356_20980 0.70 +1.4 4,669,747 - AO356_20980 0.70 +1.3 4,669,747 - AO356_20980 0.70 +1.7 4,669,747 - AO356_20980 0.70 +1.1 4,669,747 - AO356_20980 0.70 +0.2 4,669,747 - AO356_20980 0.70 +0.3 4,669,747 - AO356_20980 0.70 +0.4 4,669,747 - AO356_20980 0.70 +0.8 4,669,747 - AO356_20980 0.70 +0.0 4,669,747 - AO356_20980 0.70 +0.9 4,669,747 - AO356_20980 0.70 +0.3 4,669,762 + AO356_20980 0.71 -0.1 4,669,762 + AO356_20980 0.71 +1.5 4,669,782 + AO356_20980 0.74 -0.1 4,669,835 + AO356_20980 0.79 +0.4 4,669,836 - AO356_20980 0.80 +0.6 4,669,836 - AO356_20980 0.80 -0.5 4,669,883 - AO356_20980 0.85 +0.2 4,669,883 - AO356_20980 0.85 +0.5 4,669,955 + -0.8 4,669,956 - +0.3 4,669,961 + +0.5 4,669,962 - -1.2 4,670,019 - -0.5 4,670,019 - -0.3 4,670,019 - -0.3 4,670,037 + +0.5 4,670,037 + -0.5 4,670,038 - +0.9 4,670,038 - -0.0 4,670,068 - -0.6 4,670,094 - -0.2 4,670,095 + +0.4 4,670,095 + -0.2 4,670,095 + +1.2 4,670,095 + -0.7 4,670,096 - +0.9 4,670,096 - +0.4 4,670,096 - +0.0 4,670,096 - +2.9 4,670,096 - +0.0 4,670,096 - -0.0 4,670,097 + -0.3 4,670,097 + +0.7 4,670,097 + +0.7 4,670,098 - -0.4 4,670,098 - +0.6 4,670,098 - +0.1 4,670,107 - +0.2 4,670,110 + -1.9 4,670,110 + +0.3 4,670,110 + +0.9 4,670,110 + +0.6 4,670,110 + +0.6 4,670,111 - +0.5 4,670,111 - +0.3 4,670,111 - +0.7 4,670,111 - +0.4 4,670,111 - +1.4 4,670,133 + -0.5 4,670,289 + +1.1
Or see this region's nucleotide sequence