Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_20660

Experiment: Fusidic 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_20655 and AO356_20660 are separated by 564 nucleotidesAO356_20660 and AO356_20665 are separated by 102 nucleotidesAO356_20665 and AO356_20670 are separated by 21 nucleotides AO356_20655: AO356_20655 - AraC family transcriptional regulator, at 4,608,433 to 4,609,365 _20655 AO356_20660: AO356_20660 - glucarate transporter, at 4,609,930 to 4,611,261 _20660 AO356_20665: AO356_20665 - fumarylacetoacetate hydrolase, at 4,611,364 to 4,612,062 _20665 AO356_20670: AO356_20670 - 3-oxoacyl-ACP reductase, at 4,612,084 to 4,612,842 _20670 Position (kb) 4609 4610 4611 4612Strain fitness (log2 ratio) -2 -1 0 1 2at 4608.949 kb on + strand, within AO356_20655at 4608.949 kb on + strand, within AO356_20655at 4608.949 kb on + strand, within AO356_20655at 4608.949 kb on + strand, within AO356_20655at 4608.950 kb on - strand, within AO356_20655at 4609.247 kb on + strand, within AO356_20655at 4609.247 kb on + strand, within AO356_20655at 4609.247 kb on + strand, within AO356_20655at 4609.247 kb on + strand, within AO356_20655at 4609.247 kb on + strand, within AO356_20655at 4609.247 kb on + strand, within AO356_20655at 4609.247 kb on + strand, within AO356_20655at 4609.247 kb on + strand, within AO356_20655at 4609.247 kb on + strand, within AO356_20655at 4609.247 kb on + strand, within AO356_20655at 4609.247 kb on + strand, within AO356_20655at 4609.248 kb on - strand, within AO356_20655at 4609.301 kb on + strandat 4609.301 kb on + strandat 4609.302 kb on - strandat 4609.337 kb on + strandat 4609.337 kb on + strandat 4609.337 kb on + strandat 4609.337 kb on + strandat 4609.337 kb on + strandat 4609.338 kb on - strandat 4609.338 kb on - strandat 4609.338 kb on - strandat 4609.338 kb on - strandat 4609.338 kb on - strandat 4609.338 kb on - strandat 4609.338 kb on - strandat 4609.338 kb on - strandat 4609.338 kb on - strandat 4609.338 kb on - strandat 4609.642 kb on + strandat 4609.892 kb on + strandat 4609.893 kb on - strandat 4609.910 kb on + strandat 4609.911 kb on - strandat 4609.911 kb on - strandat 4609.911 kb on - strandat 4609.916 kb on + strandat 4609.916 kb on + strandat 4609.916 kb on + strandat 4609.916 kb on + strandat 4610.051 kb on - strandat 4610.067 kb on + strand, within AO356_20660at 4610.155 kb on + strand, within AO356_20660at 4610.155 kb on + strand, within AO356_20660at 4610.155 kb on + strand, within AO356_20660at 4610.155 kb on + strand, within AO356_20660at 4610.156 kb on - strand, within AO356_20660at 4610.215 kb on + strand, within AO356_20660at 4610.394 kb on + strand, within AO356_20660at 4610.395 kb on - strand, within AO356_20660at 4610.395 kb on - strand, within AO356_20660at 4610.398 kb on + strand, within AO356_20660at 4610.398 kb on + strand, within AO356_20660at 4610.398 kb on + strand, within AO356_20660at 4610.398 kb on + strand, within AO356_20660at 4610.399 kb on - strand, within AO356_20660at 4610.399 kb on - strand, within AO356_20660at 4610.399 kb on - strand, within AO356_20660at 4610.413 kb on + strand, within AO356_20660at 4610.414 kb on - strand, within AO356_20660at 4610.460 kb on + strand, within AO356_20660at 4610.464 kb on + strand, within AO356_20660at 4610.464 kb on + strand, within AO356_20660at 4610.464 kb on + strand, within AO356_20660at 4610.464 kb on + strand, within AO356_20660at 4610.464 kb on + strand, within AO356_20660at 4610.465 kb on - strand, within AO356_20660at 4610.485 kb on + strand, within AO356_20660at 4610.485 kb on + strand, within AO356_20660at 4610.486 kb on - strand, within AO356_20660at 4610.486 kb on - strand, within AO356_20660at 4610.486 kb on - strand, within AO356_20660at 4610.584 kb on + strand, within AO356_20660at 4610.584 kb on + strand, within AO356_20660at 4610.584 kb on + strand, within AO356_20660at 4610.584 kb on + strand, within AO356_20660at 4610.584 kb on + strand, within AO356_20660at 4610.585 kb on - strand, within AO356_20660at 4610.585 kb on - strand, within AO356_20660at 4610.585 kb on - strand, within AO356_20660at 4610.698 kb on - strand, within AO356_20660at 4610.722 kb on + strand, within AO356_20660at 4610.722 kb on + strand, within AO356_20660at 4610.723 kb on - strand, within AO356_20660at 4610.723 kb on - strand, within AO356_20660at 4610.723 kb on - strand, within AO356_20660at 4610.723 kb on - strand, within AO356_20660at 4610.749 kb on + strand, within AO356_20660at 4610.750 kb on - strand, within AO356_20660at 4610.750 kb on - strand, within AO356_20660at 4610.750 kb on - strand, within AO356_20660at 4610.865 kb on - strand, within AO356_20660at 4610.876 kb on - strand, within AO356_20660at 4611.044 kb on + strand, within AO356_20660at 4611.211 kb on + strandat 4611.212 kb on - strandat 4611.235 kb on + strandat 4611.236 kb on - strandat 4611.236 kb on - strandat 4611.312 kb on + strandat 4611.312 kb on + strandat 4611.313 kb on - strandat 4611.332 kb on - strandat 4611.332 kb on - strandat 4611.345 kb on + strandat 4611.346 kb on - strandat 4611.346 kb on - strandat 4611.379 kb on + strandat 4611.379 kb on + strandat 4611.379 kb on + strandat 4611.379 kb on + strandat 4611.380 kb on - strandat 4611.380 kb on - strandat 4611.380 kb on - strandat 4611.380 kb on - strandat 4611.388 kb on - strandat 4611.473 kb on - strand, within AO356_20665at 4611.473 kb on - strand, within AO356_20665at 4611.664 kb on + strand, within AO356_20665at 4611.664 kb on + strand, within AO356_20665at 4611.664 kb on + strand, within AO356_20665at 4611.664 kb on + strand, within AO356_20665at 4611.665 kb on - strand, within AO356_20665at 4611.665 kb on - strand, within AO356_20665at 4611.665 kb on - strand, within AO356_20665at 4611.665 kb on - strand, within AO356_20665at 4611.665 kb on - strand, within AO356_20665at 4611.665 kb on - strand, within AO356_20665

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.1 mg/ml
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4,608,949 + AO356_20655 0.55 +0.8
4,608,949 + AO356_20655 0.55 -1.8
4,608,949 + AO356_20655 0.55 -0.7
4,608,949 + AO356_20655 0.55 +0.1
4,608,950 - AO356_20655 0.55 -0.0
4,609,247 + AO356_20655 0.87 -0.3
4,609,247 + AO356_20655 0.87 -1.0
4,609,247 + AO356_20655 0.87 -0.8
4,609,247 + AO356_20655 0.87 -0.9
4,609,247 + AO356_20655 0.87 +0.3
4,609,247 + AO356_20655 0.87 -0.9
4,609,247 + AO356_20655 0.87 +0.0
4,609,247 + AO356_20655 0.87 +1.1
4,609,247 + AO356_20655 0.87 +0.1
4,609,247 + AO356_20655 0.87 -0.2
4,609,247 + AO356_20655 0.87 -0.2
4,609,248 - AO356_20655 0.87 -2.0
4,609,301 + +0.1
4,609,301 + +0.3
4,609,302 - -0.1
4,609,337 + +0.4
4,609,337 + +0.5
4,609,337 + +0.7
4,609,337 + +0.4
4,609,337 + +0.4
4,609,338 - +1.1
4,609,338 - -0.9
4,609,338 - -1.8
4,609,338 - +1.0
4,609,338 - +0.6
4,609,338 - +0.3
4,609,338 - +0.1
4,609,338 - -0.6
4,609,338 - +0.4
4,609,338 - +0.1
4,609,642 + +0.2
4,609,892 + -1.2
4,609,893 - -0.8
4,609,910 + -0.7
4,609,911 - +0.1
4,609,911 - +0.9
4,609,911 - +0.9
4,609,916 + +0.6
4,609,916 + +0.4
4,609,916 + -0.4
4,609,916 + +0.1
4,610,051 - +0.9
4,610,067 + AO356_20660 0.10 -1.4
4,610,155 + AO356_20660 0.17 -0.1
4,610,155 + AO356_20660 0.17 +2.1
4,610,155 + AO356_20660 0.17 -0.1
4,610,155 + AO356_20660 0.17 +0.2
4,610,156 - AO356_20660 0.17 -0.5
4,610,215 + AO356_20660 0.21 +0.7
4,610,394 + AO356_20660 0.35 +0.4
4,610,395 - AO356_20660 0.35 +0.6
4,610,395 - AO356_20660 0.35 +0.2
4,610,398 + AO356_20660 0.35 +0.9
4,610,398 + AO356_20660 0.35 +0.3
4,610,398 + AO356_20660 0.35 +0.2
4,610,398 + AO356_20660 0.35 +0.5
4,610,399 - AO356_20660 0.35 +0.7
4,610,399 - AO356_20660 0.35 -0.5
4,610,399 - AO356_20660 0.35 -0.8
4,610,413 + AO356_20660 0.36 -0.0
4,610,414 - AO356_20660 0.36 +0.3
4,610,460 + AO356_20660 0.40 -0.5
4,610,464 + AO356_20660 0.40 +0.4
4,610,464 + AO356_20660 0.40 -1.1
4,610,464 + AO356_20660 0.40 -1.8
4,610,464 + AO356_20660 0.40 -0.8
4,610,464 + AO356_20660 0.40 -0.2
4,610,465 - AO356_20660 0.40 +1.1
4,610,485 + AO356_20660 0.42 +1.0
4,610,485 + AO356_20660 0.42 +0.1
4,610,486 - AO356_20660 0.42 -0.5
4,610,486 - AO356_20660 0.42 -0.3
4,610,486 - AO356_20660 0.42 -0.1
4,610,584 + AO356_20660 0.49 +1.0
4,610,584 + AO356_20660 0.49 +0.9
4,610,584 + AO356_20660 0.49 +0.2
4,610,584 + AO356_20660 0.49 +0.4
4,610,584 + AO356_20660 0.49 +0.7
4,610,585 - AO356_20660 0.49 -0.1
4,610,585 - AO356_20660 0.49 +0.4
4,610,585 - AO356_20660 0.49 -0.6
4,610,698 - AO356_20660 0.58 +0.9
4,610,722 + AO356_20660 0.59 +0.1
4,610,722 + AO356_20660 0.59 +0.3
4,610,723 - AO356_20660 0.60 +0.2
4,610,723 - AO356_20660 0.60 -1.6
4,610,723 - AO356_20660 0.60 -0.3
4,610,723 - AO356_20660 0.60 +0.1
4,610,749 + AO356_20660 0.61 -0.9
4,610,750 - AO356_20660 0.62 -0.0
4,610,750 - AO356_20660 0.62 +0.6
4,610,750 - AO356_20660 0.62 +1.2
4,610,865 - AO356_20660 0.70 -0.0
4,610,876 - AO356_20660 0.71 -0.7
4,611,044 + AO356_20660 0.84 +0.1
4,611,211 + -0.9
4,611,212 - +0.0
4,611,235 + +0.2
4,611,236 - -0.5
4,611,236 - +0.3
4,611,312 + +0.5
4,611,312 + -1.0
4,611,313 - -0.1
4,611,332 - +0.4
4,611,332 - -0.0
4,611,345 + +0.3
4,611,346 - -2.0
4,611,346 - -1.1
4,611,379 + -0.2
4,611,379 + +0.4
4,611,379 + -0.7
4,611,379 + +0.3
4,611,380 - +0.6
4,611,380 - +0.0
4,611,380 - -1.0
4,611,380 - +1.5
4,611,388 - +0.6
4,611,473 - AO356_20665 0.16 +1.0
4,611,473 - AO356_20665 0.16 -0.9
4,611,664 + AO356_20665 0.43 +0.7
4,611,664 + AO356_20665 0.43 +0.3
4,611,664 + AO356_20665 0.43 +0.1
4,611,664 + AO356_20665 0.43 -0.7
4,611,665 - AO356_20665 0.43 -0.7
4,611,665 - AO356_20665 0.43 +0.1
4,611,665 - AO356_20665 0.43 +0.5
4,611,665 - AO356_20665 0.43 -0.7
4,611,665 - AO356_20665 0.43 -0.4
4,611,665 - AO356_20665 0.43 +0.1

Or see this region's nucleotide sequence