Experiment: Fusidic 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_14955 and AO356_14960 overlap by 4 nucleotides AO356_14960 and AO356_14965 are separated by 11 nucleotides AO356_14965 and AO356_14970 are separated by 109 nucleotides AO356_14970 and AO356_14975 overlap by 4 nucleotides
AO356_14955: AO356_14955 - thiamine monophosphate kinase, at 3,382,367 to 3,383,332
_14955
AO356_14960: AO356_14960 - phosphatidylglycerophosphatase, at 3,383,329 to 3,383,832
_14960
AO356_14965: AO356_14965 - ABC transporter substrate-binding protein, at 3,383,844 to 3,384,602
_14965
AO356_14970: AO356_14970 - GTP cyclohydrolase, at 3,384,712 to 3,385,329
_14970
AO356_14975: AO356_14975 - MFS transporter, at 3,385,326 to 3,385,745
_14975
Position (kb)
3383
3384
3385 Strain fitness (log2 ratio)
-1
0
1
2 at 3383.851 kb on + strand at 3383.863 kb on + strand at 3383.863 kb on + strand at 3383.881 kb on + strand at 3383.882 kb on - strand at 3383.882 kb on - strand at 3383.882 kb on - strand at 3383.965 kb on - strand, within AO356_14965 at 3383.965 kb on - strand, within AO356_14965 at 3384.057 kb on + strand, within AO356_14965 at 3384.058 kb on - strand, within AO356_14965 at 3384.058 kb on - strand, within AO356_14965 at 3384.058 kb on - strand, within AO356_14965 at 3384.142 kb on - strand, within AO356_14965 at 3384.156 kb on + strand, within AO356_14965 at 3384.156 kb on + strand, within AO356_14965 at 3384.156 kb on + strand, within AO356_14965 at 3384.157 kb on - strand, within AO356_14965 at 3384.157 kb on - strand, within AO356_14965 at 3384.174 kb on + strand, within AO356_14965 at 3384.174 kb on + strand, within AO356_14965 at 3384.174 kb on + strand, within AO356_14965 at 3384.174 kb on + strand, within AO356_14965 at 3384.174 kb on + strand, within AO356_14965 at 3384.174 kb on + strand, within AO356_14965 at 3384.174 kb on + strand, within AO356_14965 at 3384.174 kb on + strand, within AO356_14965 at 3384.174 kb on + strand, within AO356_14965 at 3384.175 kb on - strand, within AO356_14965 at 3384.175 kb on - strand, within AO356_14965 at 3384.175 kb on - strand, within AO356_14965 at 3384.175 kb on - strand, within AO356_14965 at 3384.175 kb on - strand, within AO356_14965 at 3384.175 kb on - strand, within AO356_14965 at 3384.175 kb on - strand, within AO356_14965 at 3384.175 kb on - strand, within AO356_14965 at 3384.175 kb on - strand, within AO356_14965 at 3384.175 kb on - strand, within AO356_14965 at 3384.175 kb on - strand, within AO356_14965 at 3384.175 kb on - strand, within AO356_14965 at 3384.175 kb on - strand, within AO356_14965 at 3384.175 kb on - strand, within AO356_14965 at 3384.175 kb on - strand, within AO356_14965 at 3384.175 kb on - strand, within AO356_14965 at 3384.175 kb on - strand, within AO356_14965 at 3384.175 kb on - strand, within AO356_14965 at 3384.229 kb on - strand, within AO356_14965 at 3384.238 kb on + strand, within AO356_14965 at 3384.239 kb on - strand, within AO356_14965 at 3384.258 kb on + strand, within AO356_14965 at 3384.258 kb on + strand, within AO356_14965 at 3384.258 kb on + strand, within AO356_14965 at 3384.258 kb on + strand, within AO356_14965 at 3384.258 kb on + strand, within AO356_14965 at 3384.258 kb on + strand, within AO356_14965 at 3384.259 kb on - strand, within AO356_14965 at 3384.259 kb on - strand, within AO356_14965 at 3384.259 kb on - strand, within AO356_14965 at 3384.259 kb on - strand, within AO356_14965 at 3384.259 kb on - strand, within AO356_14965 at 3384.259 kb on - strand, within AO356_14965 at 3384.267 kb on + strand, within AO356_14965 at 3384.267 kb on + strand, within AO356_14965 at 3384.267 kb on + strand, within AO356_14965 at 3384.267 kb on + strand, within AO356_14965 at 3384.267 kb on + strand, within AO356_14965 at 3384.267 kb on + strand, within AO356_14965 at 3384.267 kb on + strand, within AO356_14965 at 3384.267 kb on + strand, within AO356_14965 at 3384.267 kb on + strand, within AO356_14965 at 3384.268 kb on - strand, within AO356_14965 at 3384.268 kb on - strand, within AO356_14965 at 3384.268 kb on - strand, within AO356_14965 at 3384.268 kb on - strand, within AO356_14965 at 3384.268 kb on - strand, within AO356_14965 at 3384.268 kb on - strand, within AO356_14965 at 3384.268 kb on - strand, within AO356_14965 at 3384.268 kb on - strand, within AO356_14965 at 3384.268 kb on - strand, within AO356_14965 at 3384.268 kb on - strand, within AO356_14965 at 3384.314 kb on + strand, within AO356_14965 at 3384.314 kb on + strand, within AO356_14965 at 3384.315 kb on - strand, within AO356_14965 at 3384.315 kb on - strand, within AO356_14965 at 3384.444 kb on + strand, within AO356_14965 at 3384.444 kb on + strand, within AO356_14965 at 3384.444 kb on + strand, within AO356_14965 at 3384.445 kb on - strand, within AO356_14965 at 3384.445 kb on - strand, within AO356_14965 at 3384.445 kb on - strand, within AO356_14965 at 3384.445 kb on - strand, within AO356_14965 at 3384.445 kb on - strand, within AO356_14965 at 3384.564 kb on + strand at 3384.565 kb on - strand at 3384.620 kb on + strand at 3384.620 kb on + strand at 3384.621 kb on - strand at 3384.640 kb on - strand at 3384.663 kb on + strand at 3384.663 kb on + strand at 3384.663 kb on + strand at 3384.663 kb on + strand at 3384.663 kb on + strand at 3384.663 kb on + strand at 3384.663 kb on + strand at 3384.691 kb on + strand at 3384.691 kb on + strand at 3384.694 kb on + strand at 3384.694 kb on + strand at 3384.694 kb on + strand at 3385.375 kb on - strand, within AO356_14975 at 3385.375 kb on - strand, within AO356_14975 at 3385.516 kb on - strand, within AO356_14975 at 3385.516 kb on - strand, within AO356_14975 at 3385.517 kb on + strand, within AO356_14975 at 3385.517 kb on + strand, within AO356_14975 at 3385.517 kb on + strand, within AO356_14975 at 3385.517 kb on + strand, within AO356_14975 at 3385.517 kb on + strand, within AO356_14975 at 3385.518 kb on - strand, within AO356_14975 at 3385.518 kb on - strand, within AO356_14975
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.1 mg/ml remove 3,383,851 + -0.2 3,383,863 + +1.3 3,383,863 + +0.1 3,383,881 + +0.1 3,383,882 - +0.7 3,383,882 - -1.0 3,383,882 - -0.7 3,383,965 - AO356_14965 0.16 +0.8 3,383,965 - AO356_14965 0.16 +0.9 3,384,057 + AO356_14965 0.28 +0.4 3,384,058 - AO356_14965 0.28 +0.3 3,384,058 - AO356_14965 0.28 +0.5 3,384,058 - AO356_14965 0.28 -0.2 3,384,142 - AO356_14965 0.39 +0.9 3,384,156 + AO356_14965 0.41 +0.6 3,384,156 + AO356_14965 0.41 +1.5 3,384,156 + AO356_14965 0.41 -0.9 3,384,157 - AO356_14965 0.41 +0.7 3,384,157 - AO356_14965 0.41 +0.3 3,384,174 + AO356_14965 0.43 -0.1 3,384,174 + AO356_14965 0.43 +0.8 3,384,174 + AO356_14965 0.43 +2.2 3,384,174 + AO356_14965 0.43 -0.0 3,384,174 + AO356_14965 0.43 +1.6 3,384,174 + AO356_14965 0.43 +0.9 3,384,174 + AO356_14965 0.43 +1.3 3,384,174 + AO356_14965 0.43 +0.7 3,384,174 + AO356_14965 0.43 -0.2 3,384,175 - AO356_14965 0.44 -0.4 3,384,175 - AO356_14965 0.44 -0.4 3,384,175 - AO356_14965 0.44 +1.0 3,384,175 - AO356_14965 0.44 -0.2 3,384,175 - AO356_14965 0.44 +0.2 3,384,175 - AO356_14965 0.44 +1.2 3,384,175 - AO356_14965 0.44 +0.9 3,384,175 - AO356_14965 0.44 -0.4 3,384,175 - AO356_14965 0.44 +0.8 3,384,175 - AO356_14965 0.44 +0.7 3,384,175 - AO356_14965 0.44 +0.8 3,384,175 - AO356_14965 0.44 +0.3 3,384,175 - AO356_14965 0.44 +0.6 3,384,175 - AO356_14965 0.44 +0.9 3,384,175 - AO356_14965 0.44 +0.1 3,384,175 - AO356_14965 0.44 +1.2 3,384,175 - AO356_14965 0.44 +0.9 3,384,175 - AO356_14965 0.44 +0.3 3,384,229 - AO356_14965 0.51 +0.3 3,384,238 + AO356_14965 0.52 +0.7 3,384,239 - AO356_14965 0.52 +0.1 3,384,258 + AO356_14965 0.55 +0.1 3,384,258 + AO356_14965 0.55 +1.2 3,384,258 + AO356_14965 0.55 +0.8 3,384,258 + AO356_14965 0.55 +0.4 3,384,258 + AO356_14965 0.55 +0.6 3,384,258 + AO356_14965 0.55 +0.7 3,384,259 - AO356_14965 0.55 +0.9 3,384,259 - AO356_14965 0.55 +0.5 3,384,259 - AO356_14965 0.55 +0.7 3,384,259 - AO356_14965 0.55 -0.1 3,384,259 - AO356_14965 0.55 +0.2 3,384,259 - AO356_14965 0.55 +0.2 3,384,267 + AO356_14965 0.56 +1.1 3,384,267 + AO356_14965 0.56 +1.0 3,384,267 + AO356_14965 0.56 +0.8 3,384,267 + AO356_14965 0.56 +0.6 3,384,267 + AO356_14965 0.56 +0.6 3,384,267 + AO356_14965 0.56 +1.4 3,384,267 + AO356_14965 0.56 +0.8 3,384,267 + AO356_14965 0.56 +0.6 3,384,267 + AO356_14965 0.56 -0.1 3,384,268 - AO356_14965 0.56 +0.6 3,384,268 - AO356_14965 0.56 -0.3 3,384,268 - AO356_14965 0.56 +1.1 3,384,268 - AO356_14965 0.56 +0.9 3,384,268 - AO356_14965 0.56 +0.8 3,384,268 - AO356_14965 0.56 +0.2 3,384,268 - AO356_14965 0.56 +0.6 3,384,268 - AO356_14965 0.56 +0.9 3,384,268 - AO356_14965 0.56 +0.3 3,384,268 - AO356_14965 0.56 +0.3 3,384,314 + AO356_14965 0.62 +0.6 3,384,314 + AO356_14965 0.62 +1.3 3,384,315 - AO356_14965 0.62 +0.6 3,384,315 - AO356_14965 0.62 -0.3 3,384,444 + AO356_14965 0.79 +0.3 3,384,444 + AO356_14965 0.79 +0.4 3,384,444 + AO356_14965 0.79 +0.3 3,384,445 - AO356_14965 0.79 -0.8 3,384,445 - AO356_14965 0.79 +0.0 3,384,445 - AO356_14965 0.79 +0.6 3,384,445 - AO356_14965 0.79 +0.5 3,384,445 - AO356_14965 0.79 -0.4 3,384,564 + +0.2 3,384,565 - +0.3 3,384,620 + +0.5 3,384,620 + -0.1 3,384,621 - +0.6 3,384,640 - +0.7 3,384,663 + -0.2 3,384,663 + -0.7 3,384,663 + -0.2 3,384,663 + -0.3 3,384,663 + -0.0 3,384,663 + -0.6 3,384,663 + -0.4 3,384,691 + +1.0 3,384,691 + +0.3 3,384,694 + +0.2 3,384,694 + +0.2 3,384,694 + +0.0 3,385,375 - AO356_14975 0.12 +0.1 3,385,375 - AO356_14975 0.12 +0.3 3,385,516 - AO356_14975 0.45 +0.4 3,385,516 - AO356_14975 0.45 -0.7 3,385,517 + AO356_14975 0.45 +0.1 3,385,517 + AO356_14975 0.45 +0.5 3,385,517 + AO356_14975 0.45 +0.4 3,385,517 + AO356_14975 0.45 +0.0 3,385,517 + AO356_14975 0.45 +1.0 3,385,518 - AO356_14975 0.46 +0.4 3,385,518 - AO356_14975 0.46 +0.6
Or see this region's nucleotide sequence