Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3087

Experiment: MoYLS4 with Doxycycline hyclate 0.003 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_3085 and DvMF_3086 are separated by 146 nucleotidesDvMF_3086 and DvMF_3087 overlap by 4 nucleotidesDvMF_3087 and DvMF_3088 are separated by 3 nucleotides DvMF_3085: DvMF_3085 - acylphosphatase (RefSeq), at 3,898,109 to 3,898,447 _3085 DvMF_3086: DvMF_3086 - DNA repair protein RadC (RefSeq), at 3,898,594 to 3,899,271 _3086 DvMF_3087: DvMF_3087 - hypothetical protein (RefSeq), at 3,899,268 to 3,899,411 _3087 DvMF_3088: DvMF_3088 - hypothetical protein (RefSeq), at 3,899,415 to 3,900,566 _3088 Position (kb) 3899 3900Strain fitness (log2 ratio) -1 0 1at 3898.366 kb on + strand, within DvMF_3085at 3898.818 kb on - strand, within DvMF_3086at 3898.889 kb on + strand, within DvMF_3086at 3898.957 kb on + strand, within DvMF_3086at 3898.957 kb on + strand, within DvMF_3086at 3898.965 kb on - strand, within DvMF_3086at 3899.043 kb on + strand, within DvMF_3086at 3899.244 kb on + strandat 3899.341 kb on - strand, within DvMF_3087at 3899.389 kb on - strand, within DvMF_3087

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Doxycycline hyclate 0.003 mg/ml
remove
3,898,366 + DvMF_3085 0.76 -0.3
3,898,818 - DvMF_3086 0.33 -0.1
3,898,889 + DvMF_3086 0.44 -0.3
3,898,957 + DvMF_3086 0.54 -0.5
3,898,957 + DvMF_3086 0.54 -0.6
3,898,965 - DvMF_3086 0.55 -0.2
3,899,043 + DvMF_3086 0.66 +0.2
3,899,244 + -1.7
3,899,341 - DvMF_3087 0.51 -1.1
3,899,389 - DvMF_3087 0.84 -1.1

Or see this region's nucleotide sequence