Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2658

Experiment: MoYLS4 with Doxycycline hyclate 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2657 and DvMF_2658 are separated by 58 nucleotidesDvMF_2658 and DvMF_2659 are separated by 201 nucleotides DvMF_2657: DvMF_2657 - Serine O-acetyltransferase (RefSeq), at 3,356,517 to 3,357,470 _2657 DvMF_2658: DvMF_2658 - cysteine synthase (RefSeq), at 3,357,529 to 3,358,461 _2658 DvMF_2659: DvMF_2659 - cysteine desulfurase NifS (RefSeq), at 3,358,663 to 3,359,877 _2659 Position (kb) 3357 3358 3359Strain fitness (log2 ratio) -3 -2 -1 0 1at 3356.553 kb on - strandat 3358.587 kb on - strandat 3358.670 kb on - strandat 3358.694 kb on + strandat 3358.702 kb on - strandat 3358.702 kb on - strandat 3358.702 kb on - strandat 3358.789 kb on + strand, within DvMF_2659at 3358.895 kb on - strand, within DvMF_2659at 3358.895 kb on - strand, within DvMF_2659at 3359.095 kb on + strand, within DvMF_2659at 3359.219 kb on - strand, within DvMF_2659at 3359.252 kb on + strand, within DvMF_2659at 3359.327 kb on - strand, within DvMF_2659

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Doxycycline hyclate 0.003 mg/ml
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3,356,553 - -1.6
3,358,587 - -0.1
3,358,670 - -0.1
3,358,694 + +0.6
3,358,702 - -1.4
3,358,702 - -0.7
3,358,702 - -1.0
3,358,789 + DvMF_2659 0.10 -0.9
3,358,895 - DvMF_2659 0.19 -3.1
3,358,895 - DvMF_2659 0.19 -1.2
3,359,095 + DvMF_2659 0.36 -0.6
3,359,219 - DvMF_2659 0.46 -0.0
3,359,252 + DvMF_2659 0.48 -0.0
3,359,327 - DvMF_2659 0.55 -3.4

Or see this region's nucleotide sequence