Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2583

Experiment: MoYLS4 with Doxycycline hyclate 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2582 and DvMF_2583 are separated by 427 nucleotidesDvMF_2583 and DvMF_2584 are separated by 3 nucleotides DvMF_2582: DvMF_2582 - dihydroxyacetone kinase subunit DhaK (RefSeq), at 3,265,869 to 3,266,933 _2582 DvMF_2583: DvMF_2583 - dihydroxyacetone kinase, L subunit (RefSeq), at 3,267,361 to 3,267,993 _2583 DvMF_2584: DvMF_2584 - phosphoenolpyruvate-protein phosphotransferase (RefSeq), at 3,267,997 to 3,270,537 _2584 Position (kb) 3267 3268Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3266.373 kb on + strand, within DvMF_2582at 3266.531 kb on - strand, within DvMF_2582at 3266.544 kb on + strand, within DvMF_2582at 3266.554 kb on - strand, within DvMF_2582at 3266.563 kb on + strand, within DvMF_2582at 3266.604 kb on + strand, within DvMF_2582at 3266.612 kb on - strand, within DvMF_2582at 3266.705 kb on - strand, within DvMF_2582at 3266.928 kb on + strandat 3267.001 kb on - strandat 3267.001 kb on - strandat 3267.138 kb on - strandat 3267.501 kb on - strand, within DvMF_2583at 3267.643 kb on - strand, within DvMF_2583at 3267.934 kb on + strandat 3268.211 kb on - strandat 3268.213 kb on + strandat 3268.269 kb on + strand, within DvMF_2584at 3268.349 kb on - strand, within DvMF_2584at 3268.371 kb on - strand, within DvMF_2584at 3268.416 kb on + strand, within DvMF_2584at 3268.597 kb on + strand, within DvMF_2584at 3268.918 kb on - strand, within DvMF_2584

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Doxycycline hyclate 0.003 mg/ml
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3,266,373 + DvMF_2582 0.47 +0.1
3,266,531 - DvMF_2582 0.62 -1.0
3,266,544 + DvMF_2582 0.63 -0.3
3,266,554 - DvMF_2582 0.64 -4.5
3,266,563 + DvMF_2582 0.65 -1.8
3,266,604 + DvMF_2582 0.69 -0.9
3,266,612 - DvMF_2582 0.70 +0.5
3,266,705 - DvMF_2582 0.78 -1.3
3,266,928 + -0.1
3,267,001 - -0.5
3,267,001 - -1.4
3,267,138 - -0.5
3,267,501 - DvMF_2583 0.22 -2.0
3,267,643 - DvMF_2583 0.45 -0.7
3,267,934 + -1.1
3,268,211 - -1.2
3,268,213 + -0.4
3,268,269 + DvMF_2584 0.11 +1.6
3,268,349 - DvMF_2584 0.14 +0.3
3,268,371 - DvMF_2584 0.15 -1.0
3,268,416 + DvMF_2584 0.16 -0.6
3,268,597 + DvMF_2584 0.24 -0.2
3,268,918 - DvMF_2584 0.36 -0.7

Or see this region's nucleotide sequence