Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2323

Experiment: MoYLS4 with Doxycycline hyclate 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2322 and DvMF_2323 are separated by 498 nucleotidesDvMF_2323 and DvMF_2324 are separated by 114 nucleotides DvMF_2322: DvMF_2322 - bifunctional acetaldehyde-CoA/alcohol dehydrogenase (RefSeq), at 2,921,623 to 2,924,337 _2322 DvMF_2323: DvMF_2323 - hypothetical protein (RefSeq), at 2,924,836 to 2,925,915 _2323 DvMF_2324: DvMF_2324 - PAS/PAC sensor hybrid histidine kinase (RefSeq), at 2,926,030 to 2,929,518 _2324 Position (kb) 2924 2925 2926Strain fitness (log2 ratio) -3 -2 -1 0 1at 2924.012 kb on + strand, within DvMF_2322at 2925.127 kb on - strand, within DvMF_2323at 2925.255 kb on + strand, within DvMF_2323at 2925.343 kb on + strand, within DvMF_2323at 2925.359 kb on + strand, within DvMF_2323at 2925.537 kb on - strand, within DvMF_2323at 2925.600 kb on - strand, within DvMF_2323at 2925.758 kb on + strand, within DvMF_2323at 2925.962 kb on + strandat 2925.997 kb on + strandat 2926.005 kb on - strandat 2926.050 kb on - strandat 2926.246 kb on + strandat 2926.290 kb on - strandat 2926.290 kb on - strandat 2926.306 kb on + strandat 2926.570 kb on - strand, within DvMF_2324at 2926.700 kb on - strand, within DvMF_2324at 2926.831 kb on + strand, within DvMF_2324at 2926.839 kb on - strand, within DvMF_2324

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Doxycycline hyclate 0.003 mg/ml
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2,924,012 + DvMF_2322 0.88 -1.2
2,925,127 - DvMF_2323 0.27 +0.1
2,925,255 + DvMF_2323 0.39 -0.2
2,925,343 + DvMF_2323 0.47 +0.4
2,925,359 + DvMF_2323 0.48 -0.9
2,925,537 - DvMF_2323 0.65 -3.2
2,925,600 - DvMF_2323 0.71 -0.1
2,925,758 + DvMF_2323 0.85 -1.2
2,925,962 + -0.5
2,925,997 + -0.3
2,926,005 - -0.8
2,926,050 - -0.1
2,926,246 + -2.3
2,926,290 - -0.4
2,926,290 - -1.5
2,926,306 + -1.5
2,926,570 - DvMF_2324 0.15 -0.6
2,926,700 - DvMF_2324 0.19 -0.5
2,926,831 + DvMF_2324 0.23 -0.4
2,926,839 - DvMF_2324 0.23 -0.9

Or see this region's nucleotide sequence