Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2321

Experiment: MoYLS4 with Doxycycline hyclate 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2320 and DvMF_2321 are separated by 357 nucleotidesDvMF_2321 and DvMF_2322 are separated by 341 nucleotides DvMF_2320: DvMF_2320 - 6-phosphogluconate dehydrogenase NAD-binding (RefSeq), at 2,919,356 to 2,920,219 _2320 DvMF_2321: DvMF_2321 - hypothetical protein (RefSeq), at 2,920,577 to 2,921,281 _2321 DvMF_2322: DvMF_2322 - bifunctional acetaldehyde-CoA/alcohol dehydrogenase (RefSeq), at 2,921,623 to 2,924,337 _2322 Position (kb) 2920 2921 2922Strain fitness (log2 ratio) -3 -2 -1 0 1at 2919.783 kb on + strand, within DvMF_2320at 2919.798 kb on + strand, within DvMF_2320at 2919.936 kb on - strand, within DvMF_2320at 2920.102 kb on - strand, within DvMF_2320at 2920.413 kb on + strandat 2920.432 kb on + strandat 2920.500 kb on - strandat 2920.528 kb on - strandat 2920.661 kb on - strand, within DvMF_2321at 2920.833 kb on - strand, within DvMF_2321at 2921.028 kb on + strand, within DvMF_2321at 2921.094 kb on - strand, within DvMF_2321at 2921.123 kb on + strand, within DvMF_2321at 2921.290 kb on - strandat 2921.343 kb on + strandat 2921.543 kb on + strandat 2921.838 kb on + strandat 2921.914 kb on - strand, within DvMF_2322at 2921.988 kb on + strand, within DvMF_2322at 2922.127 kb on + strand, within DvMF_2322at 2922.259 kb on + strand, within DvMF_2322

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Doxycycline hyclate 0.003 mg/ml
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2,919,783 + DvMF_2320 0.49 -2.2
2,919,798 + DvMF_2320 0.51 -1.6
2,919,936 - DvMF_2320 0.67 -3.3
2,920,102 - DvMF_2320 0.86 -0.8
2,920,413 + -2.5
2,920,432 + -1.3
2,920,500 - -0.5
2,920,528 - +0.0
2,920,661 - DvMF_2321 0.12 -0.2
2,920,833 - DvMF_2321 0.36 -0.9
2,921,028 + DvMF_2321 0.64 -0.6
2,921,094 - DvMF_2321 0.73 -1.0
2,921,123 + DvMF_2321 0.77 -0.8
2,921,290 - -0.5
2,921,343 + -0.7
2,921,543 + -0.6
2,921,838 + +0.7
2,921,914 - DvMF_2322 0.11 -1.0
2,921,988 + DvMF_2322 0.13 +0.9
2,922,127 + DvMF_2322 0.19 -0.7
2,922,259 + DvMF_2322 0.23 -0.4

Or see this region's nucleotide sequence