Experiment: MoYLS4 with Doxycycline hyclate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1729 and DvMF_1730 are separated by 242 nucleotides DvMF_1730 and DvMF_1731 are separated by 330 nucleotides DvMF_1731 and DvMF_1732 overlap by 4 nucleotides
DvMF_1729: DvMF_1729 - DNA mismatch repair protein MutL (RefSeq), at 2,112,107 to 2,114,398
_1729
DvMF_1730: DvMF_1730 - multi-sensor signal transduction histidine kinase (RefSeq), at 2,114,641 to 2,116,164
_1730
DvMF_1731: DvMF_1731 - cytochrome c class III (RefSeq), at 2,116,495 to 2,116,899
_1731
DvMF_1732: DvMF_1732 - hydrogenase (NiFe) small subunit HydA (RefSeq), at 2,116,896 to 2,117,864
_1732
Position (kb)
2114
2115
2116
2117 Strain fitness (log2 ratio)
-2
-1
0
1 at 2113.740 kb on - strand, within DvMF_1729 at 2113.864 kb on - strand, within DvMF_1729 at 2113.885 kb on + strand, within DvMF_1729 at 2113.898 kb on - strand, within DvMF_1729 at 2114.010 kb on - strand, within DvMF_1729 at 2114.130 kb on - strand, within DvMF_1729 at 2114.149 kb on - strand, within DvMF_1729 at 2114.352 kb on + strand at 2115.126 kb on + strand, within DvMF_1730 at 2115.205 kb on + strand, within DvMF_1730 at 2115.205 kb on + strand, within DvMF_1730 at 2115.205 kb on + strand, within DvMF_1730 at 2115.205 kb on + strand, within DvMF_1730 at 2115.213 kb on - strand, within DvMF_1730 at 2115.213 kb on - strand, within DvMF_1730 at 2115.223 kb on + strand, within DvMF_1730 at 2115.402 kb on - strand, within DvMF_1730 at 2115.504 kb on + strand, within DvMF_1730 at 2115.681 kb on - strand, within DvMF_1730 at 2115.766 kb on - strand, within DvMF_1730 at 2115.766 kb on - strand, within DvMF_1730 at 2115.922 kb on - strand, within DvMF_1730 at 2116.113 kb on + strand at 2116.701 kb on - strand, within DvMF_1731 at 2116.711 kb on - strand, within DvMF_1731 at 2116.725 kb on - strand, within DvMF_1731 at 2117.132 kb on - strand, within DvMF_1732
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Doxycycline hyclate 0.003 mg/ml remove 2,113,740 - DvMF_1729 0.71 -0.9 2,113,864 - DvMF_1729 0.77 -0.2 2,113,885 + DvMF_1729 0.78 -1.2 2,113,898 - DvMF_1729 0.78 -0.4 2,114,010 - DvMF_1729 0.83 -1.7 2,114,130 - DvMF_1729 0.88 -1.2 2,114,149 - DvMF_1729 0.89 -1.5 2,114,352 + -0.3 2,115,126 + DvMF_1730 0.32 +0.2 2,115,205 + DvMF_1730 0.37 -0.3 2,115,205 + DvMF_1730 0.37 +0.3 2,115,205 + DvMF_1730 0.37 -0.2 2,115,205 + DvMF_1730 0.37 -0.1 2,115,213 - DvMF_1730 0.38 +0.0 2,115,213 - DvMF_1730 0.38 -0.5 2,115,223 + DvMF_1730 0.38 -1.3 2,115,402 - DvMF_1730 0.50 +0.4 2,115,504 + DvMF_1730 0.57 -2.5 2,115,681 - DvMF_1730 0.68 +0.3 2,115,766 - DvMF_1730 0.74 -0.8 2,115,766 - DvMF_1730 0.74 -1.9 2,115,922 - DvMF_1730 0.84 -0.6 2,116,113 + -0.4 2,116,701 - DvMF_1731 0.51 +1.6 2,116,711 - DvMF_1731 0.53 -0.6 2,116,725 - DvMF_1731 0.57 -0.5 2,117,132 - DvMF_1732 0.24 -1.1
Or see this region's nucleotide sequence