Experiment: MoYLS4 with Doxycycline hyclate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1688 and DvMF_1689 are separated by 315 nucleotides DvMF_1689 and DvMF_1690 are separated by 27 nucleotides DvMF_1690 and DvMF_1691 are separated by 227 nucleotides DvMF_1691 and DvMF_1692 are separated by 296 nucleotides
DvMF_1688: DvMF_1688 - hypothetical protein (RefSeq), at 2,055,925 to 2,057,079
_1688
DvMF_1689: DvMF_1689 - hypothetical protein (RefSeq), at 2,057,395 to 2,057,658
_1689
DvMF_1690: DvMF_1690 - polysaccharide export protein (RefSeq), at 2,057,686 to 2,059,362
_1690
DvMF_1691: DvMF_1691 - hypothetical protein (RefSeq), at 2,059,590 to 2,059,991
_1691
DvMF_1692: DvMF_1692 - PAS modulated sigma54 specific transcriptional regulator, Fis family (RefSeq), at 2,060,288 to 2,061,853
_1692
Position (kb)
2057
2058
2059
2060 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2056.803 kb on + strand, within DvMF_1688 at 2056.831 kb on - strand, within DvMF_1688 at 2057.014 kb on - strand at 2057.024 kb on - strand at 2057.104 kb on + strand at 2057.338 kb on + strand at 2057.354 kb on + strand at 2057.374 kb on + strand at 2057.402 kb on + strand at 2057.951 kb on + strand, within DvMF_1690 at 2058.233 kb on - strand, within DvMF_1690 at 2058.292 kb on - strand, within DvMF_1690 at 2058.460 kb on - strand, within DvMF_1690 at 2058.540 kb on + strand, within DvMF_1690 at 2058.801 kb on - strand, within DvMF_1690 at 2058.813 kb on - strand, within DvMF_1690 at 2058.898 kb on - strand, within DvMF_1690 at 2058.898 kb on - strand, within DvMF_1690 at 2058.903 kb on - strand, within DvMF_1690 at 2058.999 kb on + strand, within DvMF_1690 at 2059.098 kb on + strand, within DvMF_1690 at 2059.395 kb on + strand at 2059.547 kb on - strand at 2059.917 kb on + strand, within DvMF_1691 at 2060.222 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Doxycycline hyclate 0.003 mg/ml remove 2,056,803 + DvMF_1688 0.76 -0.8 2,056,831 - DvMF_1688 0.78 -1.3 2,057,014 - -1.3 2,057,024 - -0.5 2,057,104 + -2.6 2,057,338 + -0.3 2,057,354 + +0.7 2,057,374 + -1.9 2,057,402 + -1.4 2,057,951 + DvMF_1690 0.16 -0.2 2,058,233 - DvMF_1690 0.33 +0.1 2,058,292 - DvMF_1690 0.36 -0.4 2,058,460 - DvMF_1690 0.46 -1.2 2,058,540 + DvMF_1690 0.51 -0.7 2,058,801 - DvMF_1690 0.66 -1.5 2,058,813 - DvMF_1690 0.67 -0.5 2,058,898 - DvMF_1690 0.72 -1.1 2,058,898 - DvMF_1690 0.72 -1.1 2,058,903 - DvMF_1690 0.73 -0.8 2,058,999 + DvMF_1690 0.78 -0.4 2,059,098 + DvMF_1690 0.84 -3.4 2,059,395 + -2.2 2,059,547 - -2.6 2,059,917 + DvMF_1691 0.81 -0.2 2,060,222 + +0.0
Or see this region's nucleotide sequence