Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1690

Experiment: MoYLS4 with Doxycycline hyclate 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1688 and DvMF_1689 are separated by 315 nucleotidesDvMF_1689 and DvMF_1690 are separated by 27 nucleotidesDvMF_1690 and DvMF_1691 are separated by 227 nucleotidesDvMF_1691 and DvMF_1692 are separated by 296 nucleotides DvMF_1688: DvMF_1688 - hypothetical protein (RefSeq), at 2,055,925 to 2,057,079 _1688 DvMF_1689: DvMF_1689 - hypothetical protein (RefSeq), at 2,057,395 to 2,057,658 _1689 DvMF_1690: DvMF_1690 - polysaccharide export protein (RefSeq), at 2,057,686 to 2,059,362 _1690 DvMF_1691: DvMF_1691 - hypothetical protein (RefSeq), at 2,059,590 to 2,059,991 _1691 DvMF_1692: DvMF_1692 - PAS modulated sigma54 specific transcriptional regulator, Fis family (RefSeq), at 2,060,288 to 2,061,853 _1692 Position (kb) 2057 2058 2059 2060Strain fitness (log2 ratio) -3 -2 -1 0 1at 2056.803 kb on + strand, within DvMF_1688at 2056.831 kb on - strand, within DvMF_1688at 2057.014 kb on - strandat 2057.024 kb on - strandat 2057.104 kb on + strandat 2057.338 kb on + strandat 2057.354 kb on + strandat 2057.374 kb on + strandat 2057.402 kb on + strandat 2057.951 kb on + strand, within DvMF_1690at 2058.233 kb on - strand, within DvMF_1690at 2058.292 kb on - strand, within DvMF_1690at 2058.460 kb on - strand, within DvMF_1690at 2058.540 kb on + strand, within DvMF_1690at 2058.801 kb on - strand, within DvMF_1690at 2058.813 kb on - strand, within DvMF_1690at 2058.898 kb on - strand, within DvMF_1690at 2058.898 kb on - strand, within DvMF_1690at 2058.903 kb on - strand, within DvMF_1690at 2058.999 kb on + strand, within DvMF_1690at 2059.098 kb on + strand, within DvMF_1690at 2059.395 kb on + strandat 2059.547 kb on - strandat 2059.917 kb on + strand, within DvMF_1691at 2060.222 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Doxycycline hyclate 0.003 mg/ml
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2,056,803 + DvMF_1688 0.76 -0.8
2,056,831 - DvMF_1688 0.78 -1.3
2,057,014 - -1.3
2,057,024 - -0.5
2,057,104 + -2.6
2,057,338 + -0.3
2,057,354 + +0.7
2,057,374 + -1.9
2,057,402 + -1.4
2,057,951 + DvMF_1690 0.16 -0.2
2,058,233 - DvMF_1690 0.33 +0.1
2,058,292 - DvMF_1690 0.36 -0.4
2,058,460 - DvMF_1690 0.46 -1.2
2,058,540 + DvMF_1690 0.51 -0.7
2,058,801 - DvMF_1690 0.66 -1.5
2,058,813 - DvMF_1690 0.67 -0.5
2,058,898 - DvMF_1690 0.72 -1.1
2,058,898 - DvMF_1690 0.72 -1.1
2,058,903 - DvMF_1690 0.73 -0.8
2,058,999 + DvMF_1690 0.78 -0.4
2,059,098 + DvMF_1690 0.84 -3.4
2,059,395 + -2.2
2,059,547 - -2.6
2,059,917 + DvMF_1691 0.81 -0.2
2,060,222 + +0.0

Or see this region's nucleotide sequence