Experiment: MoYLS4 with Doxycycline hyclate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1668 and DvMF_1669 are separated by 10 nucleotides DvMF_1669 and DvMF_1670 are separated by 8 nucleotides DvMF_1670 and DvMF_1671 are separated by 170 nucleotides DvMF_1671 and DvMF_1672 overlap by 4 nucleotides
DvMF_1668: DvMF_1668 - plasmid maintenance system killer (RefSeq), at 2,041,542 to 2,041,820
_1668
DvMF_1669: DvMF_1669 - plasmid maintenance system antidote protein, XRE family (RefSeq), at 2,041,831 to 2,042,136
_1669
DvMF_1670: DvMF_1670 - hypothetical protein (RefSeq), at 2,042,145 to 2,042,438
_1670
DvMF_1671: DvMF_1671 - hypothetical protein (RefSeq), at 2,042,609 to 2,043,241
_1671
DvMF_1672: DvMF_1672 - hypothetical protein (RefSeq), at 2,043,238 to 2,044,095
_1672
Position (kb)
2042
2043
2044 Strain fitness (log2 ratio)
-2
-1
0
1 at 2041.706 kb on + strand, within DvMF_1668 at 2042.116 kb on - strand at 2042.117 kb on + strand at 2042.233 kb on + strand, within DvMF_1670 at 2042.309 kb on - strand, within DvMF_1670 at 2042.525 kb on - strand at 2042.833 kb on + strand, within DvMF_1671 at 2043.129 kb on - strand, within DvMF_1671 at 2043.164 kb on + strand, within DvMF_1671 at 2043.191 kb on - strand at 2043.231 kb on + strand at 2043.244 kb on - strand at 2043.284 kb on - strand at 2043.320 kb on + strand at 2043.327 kb on + strand, within DvMF_1672 at 2043.656 kb on - strand, within DvMF_1672 at 2043.935 kb on + strand, within DvMF_1672 at 2043.943 kb on - strand, within DvMF_1672 at 2044.034 kb on + strand at 2044.098 kb on - strand at 2044.132 kb on - strand at 2044.193 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Doxycycline hyclate 0.003 mg/ml remove 2,041,706 + DvMF_1668 0.59 -0.5 2,042,116 - -2.4 2,042,117 + -0.6 2,042,233 + DvMF_1670 0.30 -0.7 2,042,309 - DvMF_1670 0.56 -1.0 2,042,525 - +0.2 2,042,833 + DvMF_1671 0.35 -0.5 2,043,129 - DvMF_1671 0.82 -0.0 2,043,164 + DvMF_1671 0.88 +0.5 2,043,191 - -0.1 2,043,231 + +1.1 2,043,244 - -0.7 2,043,284 - -0.7 2,043,320 + -0.0 2,043,327 + DvMF_1672 0.10 +0.2 2,043,656 - DvMF_1672 0.49 +0.1 2,043,935 + DvMF_1672 0.81 -0.6 2,043,943 - DvMF_1672 0.82 -0.6 2,044,034 + -0.3 2,044,098 - -0.3 2,044,132 - -1.8 2,044,193 + -0.7
Or see this region's nucleotide sequence