Experiment: MoYLS4 with Doxycycline hyclate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1594 and DvMF_1595 overlap by 4 nucleotides DvMF_1595 and DvMF_1596 overlap by 8 nucleotides DvMF_1596 and DvMF_1597 are separated by 6 nucleotides
DvMF_1594: DvMF_1594 - NADH-quinone oxidoreductase, B subunit (RefSeq), at 1,966,385 to 1,966,948
_1594
DvMF_1595: DvMF_1595 - NADH dehydrogenase (ubiquinone) 30 kDa subunit (RefSeq), at 1,966,945 to 1,967,550
_1595
DvMF_1596: DvMF_1596 - NADH dehydrogenase (quinone) (RefSeq), at 1,967,543 to 1,968,763
_1596
DvMF_1597: DvMF_1597 - NADH dehydrogenase (quinone) (RefSeq), at 1,968,770 to 1,969,744
_1597
Position (kb)
1967
1968
1969 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1966.780 kb on + strand, within DvMF_1594 at 1966.854 kb on + strand, within DvMF_1594 at 1967.048 kb on - strand, within DvMF_1595 at 1967.050 kb on + strand, within DvMF_1595 at 1967.050 kb on + strand, within DvMF_1595 at 1967.230 kb on + strand, within DvMF_1595 at 1967.319 kb on + strand, within DvMF_1595 at 1967.327 kb on - strand, within DvMF_1595 at 1967.833 kb on + strand, within DvMF_1596 at 1968.114 kb on - strand, within DvMF_1596 at 1968.288 kb on - strand, within DvMF_1596 at 1968.368 kb on + strand, within DvMF_1596 at 1968.514 kb on - strand, within DvMF_1596 at 1968.516 kb on - strand, within DvMF_1596 at 1968.607 kb on - strand, within DvMF_1596 at 1969.124 kb on - strand, within DvMF_1597 at 1969.174 kb on - strand, within DvMF_1597 at 1969.261 kb on + strand, within DvMF_1597 at 1969.344 kb on - strand, within DvMF_1597 at 1969.416 kb on - strand, within DvMF_1597 at 1969.661 kb on - strand at 1969.749 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Doxycycline hyclate 0.003 mg/ml remove 1,966,780 + DvMF_1594 0.70 -1.5 1,966,854 + DvMF_1594 0.83 +0.2 1,967,048 - DvMF_1595 0.17 -0.2 1,967,050 + DvMF_1595 0.17 -0.9 1,967,050 + DvMF_1595 0.17 -0.5 1,967,230 + DvMF_1595 0.47 -0.2 1,967,319 + DvMF_1595 0.62 +0.2 1,967,327 - DvMF_1595 0.63 -3.6 1,967,833 + DvMF_1596 0.24 -0.9 1,968,114 - DvMF_1596 0.47 +0.4 1,968,288 - DvMF_1596 0.61 -2.3 1,968,368 + DvMF_1596 0.68 -0.3 1,968,514 - DvMF_1596 0.80 -1.2 1,968,516 - DvMF_1596 0.80 -1.2 1,968,607 - DvMF_1596 0.87 -1.8 1,969,124 - DvMF_1597 0.36 -2.3 1,969,174 - DvMF_1597 0.41 -2.0 1,969,261 + DvMF_1597 0.50 -0.7 1,969,344 - DvMF_1597 0.59 -0.6 1,969,416 - DvMF_1597 0.66 -0.5 1,969,661 - -0.5 1,969,749 + -0.2
Or see this region's nucleotide sequence