Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1582

Experiment: MoYLS4 with Doxycycline hyclate 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1581 and DvMF_1582 overlap by 4 nucleotidesDvMF_1582 and DvMF_1583 overlap by 4 nucleotidesDvMF_1583 and DvMF_1584 overlap by 8 nucleotides DvMF_1581: DvMF_1581 - inner-membrane translocator (RefSeq), at 1,950,400 to 1,951,326 _1581 DvMF_1582: DvMF_1582 - inner-membrane translocator (RefSeq), at 1,951,323 to 1,952,264 _1582 DvMF_1583: DvMF_1583 - ABC transporter related (RefSeq), at 1,952,261 to 1,952,983 _1583 DvMF_1584: DvMF_1584 - ABC transporter related (RefSeq), at 1,952,976 to 1,953,680 _1584 Position (kb) 1951 1952 1953Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1950.352 kb on + strandat 1950.352 kb on + strandat 1950.365 kb on + strandat 1950.393 kb on - strandat 1950.727 kb on + strand, within DvMF_1581at 1950.890 kb on - strand, within DvMF_1581at 1950.909 kb on - strand, within DvMF_1581at 1950.921 kb on + strand, within DvMF_1581at 1950.963 kb on + strand, within DvMF_1581at 1950.963 kb on + strand, within DvMF_1581at 1950.976 kb on + strand, within DvMF_1581at 1950.981 kb on + strand, within DvMF_1581at 1951.011 kb on + strand, within DvMF_1581at 1951.049 kb on - strand, within DvMF_1581at 1951.168 kb on - strand, within DvMF_1581at 1951.175 kb on + strand, within DvMF_1581at 1951.179 kb on + strand, within DvMF_1581at 1951.227 kb on - strand, within DvMF_1581at 1951.227 kb on - strand, within DvMF_1581at 1951.346 kb on + strandat 1951.527 kb on + strand, within DvMF_1582at 1951.618 kb on + strand, within DvMF_1582at 1951.654 kb on + strand, within DvMF_1582at 1951.819 kb on - strand, within DvMF_1582at 1951.847 kb on - strand, within DvMF_1582at 1951.941 kb on - strand, within DvMF_1582at 1951.969 kb on - strand, within DvMF_1582at 1952.352 kb on - strand, within DvMF_1583at 1952.393 kb on - strand, within DvMF_1583at 1952.393 kb on - strand, within DvMF_1583at 1952.398 kb on - strand, within DvMF_1583at 1952.403 kb on - strand, within DvMF_1583at 1952.443 kb on + strand, within DvMF_1583at 1952.443 kb on + strand, within DvMF_1583at 1952.516 kb on - strand, within DvMF_1583at 1952.516 kb on - strand, within DvMF_1583at 1952.610 kb on - strand, within DvMF_1583at 1952.618 kb on + strand, within DvMF_1583at 1952.803 kb on - strand, within DvMF_1583at 1952.919 kb on - strandat 1952.952 kb on + strandat 1953.141 kb on + strand, within DvMF_1584at 1953.150 kb on - strand, within DvMF_1584at 1953.190 kb on + strand, within DvMF_1584at 1953.263 kb on - strand, within DvMF_1584

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Doxycycline hyclate 0.003 mg/ml
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1,950,352 + -0.9
1,950,352 + -0.9
1,950,365 + -1.1
1,950,393 - +0.5
1,950,727 + DvMF_1581 0.35 -2.7
1,950,890 - DvMF_1581 0.53 -0.1
1,950,909 - DvMF_1581 0.55 -0.5
1,950,921 + DvMF_1581 0.56 -1.1
1,950,963 + DvMF_1581 0.61 -0.9
1,950,963 + DvMF_1581 0.61 -0.8
1,950,976 + DvMF_1581 0.62 +0.4
1,950,981 + DvMF_1581 0.63 -0.5
1,951,011 + DvMF_1581 0.66 -0.5
1,951,049 - DvMF_1581 0.70 -1.1
1,951,168 - DvMF_1581 0.83 -0.7
1,951,175 + DvMF_1581 0.84 -1.1
1,951,179 + DvMF_1581 0.84 +0.2
1,951,227 - DvMF_1581 0.89 -0.7
1,951,227 - DvMF_1581 0.89 -0.8
1,951,346 + +0.0
1,951,527 + DvMF_1582 0.22 +0.0
1,951,618 + DvMF_1582 0.31 -1.6
1,951,654 + DvMF_1582 0.35 -0.2
1,951,819 - DvMF_1582 0.53 -0.1
1,951,847 - DvMF_1582 0.56 -1.4
1,951,941 - DvMF_1582 0.66 -1.5
1,951,969 - DvMF_1582 0.69 -1.5
1,952,352 - DvMF_1583 0.13 +0.1
1,952,393 - DvMF_1583 0.18 -3.8
1,952,393 - DvMF_1583 0.18 -3.1
1,952,398 - DvMF_1583 0.19 -0.3
1,952,403 - DvMF_1583 0.20 -1.1
1,952,443 + DvMF_1583 0.25 -1.5
1,952,443 + DvMF_1583 0.25 -0.4
1,952,516 - DvMF_1583 0.35 -1.7
1,952,516 - DvMF_1583 0.35 -1.3
1,952,610 - DvMF_1583 0.48 -0.4
1,952,618 + DvMF_1583 0.49 -2.9
1,952,803 - DvMF_1583 0.75 -0.7
1,952,919 - -0.4
1,952,952 + -1.4
1,953,141 + DvMF_1584 0.23 -3.0
1,953,150 - DvMF_1584 0.25 -3.9
1,953,190 + DvMF_1584 0.30 -0.4
1,953,263 - DvMF_1584 0.41 -1.1

Or see this region's nucleotide sequence