Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1355

Experiment: MoYLS4 with Doxycycline hyclate 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1354 and DvMF_1355 are separated by 252 nucleotidesDvMF_1355 and DvMF_1356 are separated by 190 nucleotides DvMF_1354: DvMF_1354 - protein of unknown function DUF748 (RefSeq), at 1,652,559 to 1,656,845 _1354 DvMF_1355: DvMF_1355 - hypothetical protein (RefSeq), at 1,657,098 to 1,658,600 _1355 DvMF_1356: DvMF_1356 - tyrosyl-tRNA synthetase (RefSeq), at 1,658,791 to 1,659,990 _1356 Position (kb) 1657 1658 1659Strain fitness (log2 ratio) -3 -2 -1 0 1at 1656.122 kb on - strand, within DvMF_1354at 1656.183 kb on - strand, within DvMF_1354at 1656.228 kb on + strand, within DvMF_1354at 1656.286 kb on + strand, within DvMF_1354at 1656.459 kb on - strandat 1656.459 kb on - strandat 1657.271 kb on + strand, within DvMF_1355at 1657.785 kb on + strand, within DvMF_1355at 1657.793 kb on - strand, within DvMF_1355at 1657.869 kb on - strand, within DvMF_1355at 1657.934 kb on - strand, within DvMF_1355at 1658.655 kb on - strandat 1658.783 kb on + strandat 1658.791 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Doxycycline hyclate 0.003 mg/ml
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1,656,122 - DvMF_1354 0.83 -1.2
1,656,183 - DvMF_1354 0.85 -0.8
1,656,228 + DvMF_1354 0.86 +0.2
1,656,286 + DvMF_1354 0.87 +1.1
1,656,459 - -1.4
1,656,459 - -0.4
1,657,271 + DvMF_1355 0.12 +0.0
1,657,785 + DvMF_1355 0.46 -3.6
1,657,793 - DvMF_1355 0.46 -1.9
1,657,869 - DvMF_1355 0.51 -2.1
1,657,934 - DvMF_1355 0.56 -2.0
1,658,655 - -0.8
1,658,783 + -0.5
1,658,791 - -1.6

Or see this region's nucleotide sequence