Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1130

Experiment: MoYLS4 with Doxycycline hyclate 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1129 and DvMF_1130 are separated by 512 nucleotidesDvMF_1130 and DvMF_1131 are separated by 404 nucleotides DvMF_1129: DvMF_1129 - two component transcriptional regulator, LuxR family (RefSeq), at 1,385,629 to 1,386,324 _1129 DvMF_1130: DvMF_1130 - hypothetical protein (RefSeq), at 1,386,837 to 1,387,103 _1130 DvMF_1131: DvMF_1131 - response regulator receiver sensor signal transduction histidine kinase (RefSeq), at 1,387,508 to 1,389,010 _1131 Position (kb) 1386 1387 1388Strain fitness (log2 ratio) -1 0 1at 1386.084 kb on - strand, within DvMF_1129at 1386.239 kb on - strand, within DvMF_1129at 1386.330 kb on + strandat 1386.390 kb on + strandat 1386.390 kb on + strandat 1386.546 kb on - strandat 1386.580 kb on - strandat 1386.772 kb on - strandat 1386.952 kb on - strand, within DvMF_1130at 1387.175 kb on - strandat 1387.359 kb on - strandat 1387.367 kb on - strandat 1387.650 kb on + strandat 1387.685 kb on - strand, within DvMF_1131at 1387.790 kb on - strand, within DvMF_1131at 1387.891 kb on - strand, within DvMF_1131at 1388.069 kb on - strand, within DvMF_1131

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Doxycycline hyclate 0.003 mg/ml
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1,386,084 - DvMF_1129 0.65 -0.9
1,386,239 - DvMF_1129 0.88 -0.2
1,386,330 + -0.5
1,386,390 + -1.3
1,386,390 + +1.0
1,386,546 - -0.3
1,386,580 - -0.3
1,386,772 - +0.0
1,386,952 - DvMF_1130 0.43 -1.1
1,387,175 - -0.9
1,387,359 - -0.3
1,387,367 - -0.2
1,387,650 + -0.7
1,387,685 - DvMF_1131 0.12 -0.6
1,387,790 - DvMF_1131 0.19 -0.1
1,387,891 - DvMF_1131 0.25 -0.3
1,388,069 - DvMF_1131 0.37 -0.7

Or see this region's nucleotide sequence