Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0936

Experiment: MoYLS4 with Doxycycline hyclate 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0935 and DvMF_0936 are separated by 187 nucleotidesDvMF_0936 and DvMF_0937 are separated by 341 nucleotides DvMF_0935: DvMF_0935 - glycoside hydrolase family 57 (RefSeq), at 1,133,707 to 1,136,172 _0935 DvMF_0936: DvMF_0936 - hypothetical protein (RefSeq), at 1,136,360 to 1,136,827 _0936 DvMF_0937: DvMF_0937 - ferredoxin-NADP(+) reductase subunit alpha (RefSeq), at 1,137,169 to 1,138,017 _0937 Position (kb) 1136 1137Strain fitness (log2 ratio) -2 -1 0 1at 1135.553 kb on + strand, within DvMF_0935at 1135.863 kb on + strand, within DvMF_0935at 1135.904 kb on + strand, within DvMF_0935at 1136.015 kb on - strandat 1136.022 kb on + strandat 1136.139 kb on + strandat 1136.167 kb on + strandat 1136.465 kb on - strand, within DvMF_0936at 1136.516 kb on - strand, within DvMF_0936at 1137.012 kb on + strandat 1137.012 kb on + strandat 1137.099 kb on + strandat 1137.406 kb on - strand, within DvMF_0937at 1137.537 kb on - strand, within DvMF_0937at 1137.667 kb on + strand, within DvMF_0937at 1137.667 kb on + strand, within DvMF_0937at 1137.713 kb on - strand, within DvMF_0937at 1137.713 kb on - strand, within DvMF_0937at 1137.792 kb on + strand, within DvMF_0937

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Doxycycline hyclate 0.003 mg/ml
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1,135,553 + DvMF_0935 0.75 +0.1
1,135,863 + DvMF_0935 0.87 +0.8
1,135,904 + DvMF_0935 0.89 -0.2
1,136,015 - -0.1
1,136,022 + -0.4
1,136,139 + -0.4
1,136,167 + -1.7
1,136,465 - DvMF_0936 0.22 -1.4
1,136,516 - DvMF_0936 0.33 -1.3
1,137,012 + +0.4
1,137,012 + +0.2
1,137,099 + -1.0
1,137,406 - DvMF_0937 0.28 -1.7
1,137,537 - DvMF_0937 0.43 -2.5
1,137,667 + DvMF_0937 0.59 -0.8
1,137,667 + DvMF_0937 0.59 -0.2
1,137,713 - DvMF_0937 0.64 +0.1
1,137,713 - DvMF_0937 0.64 -2.4
1,137,792 + DvMF_0937 0.73 -1.3

Or see this region's nucleotide sequence