Experiment: MoYLS4 with Doxycycline hyclate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0879 and DvMF_0880 are separated by 174 nucleotides DvMF_0880 and DvMF_0881 are separated by 107 nucleotides DvMF_0881 and DvMF_0882 are separated by 319 nucleotides
DvMF_0879: DvMF_0879 - hypothetical protein (RefSeq), at 1,062,552 to 1,062,815
_0879
DvMF_0880: DvMF_0880 - phosphate uptake regulator, PhoU (RefSeq), at 1,062,990 to 1,063,670
_0880
DvMF_0881: DvMF_0881 - phosphate ABC transporter, ATPase subunit (RefSeq), at 1,063,778 to 1,064,545
_0881
DvMF_0882: DvMF_0882 - two component transcriptional regulator, winged helix family (RefSeq), at 1,064,865 to 1,065,557
_0882
Position (kb)
1063
1064
1065 Strain fitness (log2 ratio)
-2
-1
0
1 at 1062.978 kb on - strand at 1063.161 kb on + strand, within DvMF_0880 at 1063.229 kb on + strand, within DvMF_0880 at 1063.450 kb on + strand, within DvMF_0880 at 1063.458 kb on - strand, within DvMF_0880 at 1063.513 kb on - strand, within DvMF_0880 at 1064.059 kb on - strand, within DvMF_0881 at 1064.098 kb on + strand, within DvMF_0881 at 1064.627 kb on + strand at 1064.723 kb on - strand at 1064.963 kb on - strand, within DvMF_0882 at 1065.009 kb on - strand, within DvMF_0882 at 1065.139 kb on - strand, within DvMF_0882 at 1065.478 kb on - strand, within DvMF_0882
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Doxycycline hyclate 0.003 mg/ml remove 1,062,978 - -0.4 1,063,161 + DvMF_0880 0.25 -0.1 1,063,229 + DvMF_0880 0.35 -2.7 1,063,450 + DvMF_0880 0.68 -0.1 1,063,458 - DvMF_0880 0.69 -1.1 1,063,513 - DvMF_0880 0.77 +0.5 1,064,059 - DvMF_0881 0.37 +0.8 1,064,098 + DvMF_0881 0.42 -0.7 1,064,627 + +0.5 1,064,723 - -0.5 1,064,963 - DvMF_0882 0.14 -0.3 1,065,009 - DvMF_0882 0.21 +0.3 1,065,139 - DvMF_0882 0.40 -1.2 1,065,478 - DvMF_0882 0.88 -1.2
Or see this region's nucleotide sequence