Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0820

Experiment: MoYLS4 with Doxycycline hyclate 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0818 and DvMF_0819 are separated by 115 nucleotidesDvMF_0819 and DvMF_0820 overlap by 11 nucleotidesDvMF_0820 and DvMF_0821 are separated by 138 nucleotides DvMF_0818: DvMF_0818 - type IV pilus assembly PilZ (RefSeq), at 987,175 to 987,705 _0818 DvMF_0819: DvMF_0819 - OmpA/MotB domain protein (RefSeq), at 987,821 to 988,555 _0819 DvMF_0820: DvMF_0820 - MotA/TolQ/ExbB proton channel (RefSeq), at 988,545 to 989,300 _0820 DvMF_0821: DvMF_0821 - purine nucleoside phosphorylase (RefSeq), at 989,439 to 990,284 _0821 Position (kb) 988 989 990Strain fitness (log2 ratio) -3 -2 -1 0 1at 987.740 kb on - strandat 988.279 kb on - strand, within DvMF_0819at 988.295 kb on - strand, within DvMF_0819at 988.435 kb on + strand, within DvMF_0819at 988.720 kb on + strand, within DvMF_0820at 989.240 kb on + strandat 989.243 kb on - strandat 989.546 kb on - strand, within DvMF_0821at 989.680 kb on + strand, within DvMF_0821at 989.891 kb on - strand, within DvMF_0821at 990.154 kb on + strand, within DvMF_0821at 990.187 kb on + strand, within DvMF_0821at 990.279 kb on + strandat 990.279 kb on + strandat 990.291 kb on + strandat 990.299 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Doxycycline hyclate 0.003 mg/ml
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987,740 - -1.8
988,279 - DvMF_0819 0.62 -2.2
988,295 - DvMF_0819 0.64 +0.5
988,435 + DvMF_0819 0.84 -0.1
988,720 + DvMF_0820 0.23 +0.7
989,240 + -1.2
989,243 - +0.1
989,546 - DvMF_0821 0.13 -0.5
989,680 + DvMF_0821 0.28 +0.3
989,891 - DvMF_0821 0.53 -0.2
990,154 + DvMF_0821 0.85 -0.2
990,187 + DvMF_0821 0.88 -0.9
990,279 + +0.2
990,279 + -2.9
990,291 + -0.9
990,299 - -0.3

Or see this region's nucleotide sequence