Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0124

Experiment: MoYLS4 with Doxycycline hyclate 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0123 and DvMF_0124 are separated by 3 nucleotidesDvMF_0124 and DvMF_0125 overlap by 17 nucleotides DvMF_0123: DvMF_0123 - Peptidase M23 (RefSeq), at 135,433 to 136,443 _0123 DvMF_0124: DvMF_0124 - exodeoxyribonuclease VII small subunit (RefSeq), at 136,447 to 136,749 _0124 DvMF_0125: DvMF_0125 - Polyprenyl synthetase (RefSeq), at 136,733 to 137,674 _0125 Position (kb) 136 137Strain fitness (log2 ratio) -1 0 1at 135.595 kb on - strand, within DvMF_0123at 135.605 kb on - strand, within DvMF_0123at 135.676 kb on + strand, within DvMF_0123at 135.774 kb on - strand, within DvMF_0123at 136.155 kb on - strand, within DvMF_0123at 136.607 kb on + strand, within DvMF_0124at 136.622 kb on + strand, within DvMF_0124at 137.368 kb on + strand, within DvMF_0125at 137.403 kb on - strand, within DvMF_0125at 137.605 kb on + strandat 137.613 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Doxycycline hyclate 0.003 mg/ml
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135,595 - DvMF_0123 0.16 -0.4
135,605 - DvMF_0123 0.17 -0.7
135,676 + DvMF_0123 0.24 -0.3
135,774 - DvMF_0123 0.34 -1.2
136,155 - DvMF_0123 0.71 -1.3
136,607 + DvMF_0124 0.53 -1.0
136,622 + DvMF_0124 0.58 -0.7
137,368 + DvMF_0125 0.67 -0.6
137,403 - DvMF_0125 0.71 -0.2
137,605 + -0.3
137,613 - -0.5

Or see this region's nucleotide sequence