Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0026

Experiment: MoYLS4 with Doxycycline hyclate 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0024 and DvMF_0025 are separated by 44 nucleotidesDvMF_0025 and DvMF_0026 are separated by 235 nucleotidesDvMF_0026 and DvMF_0027 are separated by 224 nucleotides DvMF_0024: DvMF_0024 - histone deacetylase superfamily (RefSeq), at 29,953 to 31,272 _0024 DvMF_0025: DvMF_0025 - protein of unknown function DUF1121 (RefSeq), at 31,317 to 32,003 _0025 DvMF_0026: DvMF_0026 - succinyl-CoA synthetase, alpha subunit (RefSeq), at 32,239 to 34,368 _0026 DvMF_0027: DvMF_0027 - indolepyruvate/phenylpyruvate decarboxylase (RefSeq), at 34,593 to 36,311 _0027 Position (kb) 32 33 34 35Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 31.335 kb on - strandat 31.678 kb on + strand, within DvMF_0025at 31.793 kb on - strand, within DvMF_0025at 31.803 kb on - strand, within DvMF_0025at 31.865 kb on - strand, within DvMF_0025at 32.154 kb on - strandat 32.164 kb on - strandat 32.165 kb on - strandat 32.175 kb on - strandat 32.315 kb on + strandat 32.412 kb on + strandat 32.412 kb on + strandat 32.583 kb on - strand, within DvMF_0026at 32.837 kb on - strand, within DvMF_0026at 32.844 kb on - strand, within DvMF_0026at 32.999 kb on + strand, within DvMF_0026at 33.028 kb on - strand, within DvMF_0026at 33.120 kb on - strand, within DvMF_0026at 33.293 kb on + strand, within DvMF_0026at 33.293 kb on + strand, within DvMF_0026at 33.596 kb on + strand, within DvMF_0026at 34.020 kb on - strand, within DvMF_0026at 34.370 kb on - strandat 34.370 kb on - strandat 34.621 kb on + strandat 34.629 kb on - strandat 34.740 kb on + strandat 34.748 kb on - strandat 34.842 kb on + strand, within DvMF_0027at 34.942 kb on - strand, within DvMF_0027at 34.955 kb on - strand, within DvMF_0027at 35.055 kb on - strand, within DvMF_0027at 35.118 kb on + strand, within DvMF_0027at 35.229 kb on - strand, within DvMF_0027

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Doxycycline hyclate 0.003 mg/ml
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31,335 - -1.2
31,678 + DvMF_0025 0.53 -0.0
31,793 - DvMF_0025 0.69 +0.4
31,803 - DvMF_0025 0.71 -1.2
31,865 - DvMF_0025 0.80 -0.4
32,154 - -1.5
32,164 - -0.5
32,165 - -3.4
32,175 - -2.2
32,315 + -4.4
32,412 + -0.4
32,412 + -0.7
32,583 - DvMF_0026 0.16 +0.4
32,837 - DvMF_0026 0.28 -1.9
32,844 - DvMF_0026 0.28 -0.4
32,999 + DvMF_0026 0.36 +1.7
33,028 - DvMF_0026 0.37 -0.5
33,120 - DvMF_0026 0.41 -0.8
33,293 + DvMF_0026 0.49 -0.6
33,293 + DvMF_0026 0.49 -0.9
33,596 + DvMF_0026 0.64 -0.2
34,020 - DvMF_0026 0.84 -1.3
34,370 - -1.0
34,370 - -0.4
34,621 + -0.5
34,629 - -1.0
34,740 + -0.8
34,748 - +0.2
34,842 + DvMF_0027 0.14 -0.4
34,942 - DvMF_0027 0.20 -0.6
34,955 - DvMF_0027 0.21 -0.4
35,055 - DvMF_0027 0.27 -1.2
35,118 + DvMF_0027 0.31 -0.5
35,229 - DvMF_0027 0.37 -0.7

Or see this region's nucleotide sequence