Strain Fitness in Shewanella loihica PV-4 around Shew_2378

Experiment: 1-ethyl-3-methylimidazolium acetate 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2377 and Shew_2378 are separated by 67 nucleotidesShew_2378 and Shew_2379 are separated by 23 nucleotides Shew_2377: Shew_2377 - DNA ligase, NAD-dependent (RefSeq), at 2,779,187 to 2,781,196 _2377 Shew_2378: Shew_2378 - cell division protein ZipA (RefSeq), at 2,781,264 to 2,782,271 _2378 Shew_2379: Shew_2379 - chromosome segregation protein SMC (RefSeq), at 2,782,295 to 2,785,720 _2379 Position (kb) 2781 2782 2783Strain fitness (log2 ratio) -1 0 1at 2783.234 kb on - strand, within Shew_2379

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 10 mM
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2,783,234 - Shew_2379 0.27 -0.8

Or see this region's nucleotide sequence