Strain Fitness in Shewanella loihica PV-4 around Shew_1309

Experiment: 1-ethyl-3-methylimidazolium acetate 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-ethyl-3-methylimidazolium acetate 10 mM
1,516,450	-		Shew_1308	0.24	-0.3
1,516,456	+		Shew_1308	0.25	+0.1
1,516,487	+		Shew_1308	0.27	+0.3
1,516,493	+		Shew_1308	0.28	+0.2
1,516,494	-		Shew_1308	0.28	-0.6
1,516,494	-		Shew_1308	0.28	-0.2
1,516,496	-		Shew_1308	0.28	-0.2
1,516,501	-		Shew_1308	0.28	-0.3
1,516,501	-		Shew_1308	0.28	+0.0
1,516,511	-		Shew_1308	0.29	-0.4
1,516,512	+		Shew_1308	0.29	+0.6
1,516,512	+		Shew_1308	0.29	+0.8
1,516,520	-		Shew_1308	0.30	-2.1
1,516,528	+		Shew_1308	0.31	+0.2
1,516,528	+		Shew_1308	0.31	+0.1
1,516,536	-		Shew_1308	0.31	+1.2
1,516,542	-		Shew_1308	0.32	+0.5
1,516,551	+		Shew_1308	0.33	+0.8
1,516,552	+		Shew_1308	0.33	-0.2
1,516,552	+		Shew_1308	0.33	+0.7
1,516,552	+		Shew_1308	0.33	-0.1
1,516,560	-		Shew_1308	0.33	+1.4
1,516,560	-		Shew_1308	0.33	-0.1
1,516,560	-		Shew_1308	0.33	+0.3
1,516,560	-		Shew_1308	0.33	+0.9
1,516,560	-		Shew_1308	0.33	-0.4
1,516,560	-		Shew_1308	0.33	+0.6
1,516,560	-		Shew_1308	0.33	+0.9
1,516,572	+		Shew_1308	0.34	+0.7
1,516,608	-		Shew_1308	0.37	+1.0
1,516,614	-		Shew_1308	0.38	+0.3
1,516,614	-		Shew_1308	0.38	-0.5
1,516,622	+		Shew_1308	0.38	+0.1
1,516,630	-		Shew_1308	0.39	+0.4
1,516,641	+		Shew_1308	0.40	+0.2
1,516,709	-		Shew_1308	0.45	-1.0
1,516,709	-		Shew_1308	0.45	+0.4
1,516,714	-		Shew_1308	0.46	-0.5
1,516,784	+		Shew_1308	0.51	+0.3
1,516,784	+		Shew_1308	0.51	+0.5
1,516,784	+		Shew_1308	0.51	-1.8
1,516,784	+		Shew_1308	0.51	+0.7
1,516,784	+		Shew_1308	0.51	+1.1
1,516,792	-		Shew_1308	0.52	-1.7
1,516,792	-		Shew_1308	0.52	+0.0
1,516,792	-		Shew_1308	0.52	+0.2
1,516,792	-		Shew_1308	0.52	+0.0
1,516,800	+		Shew_1308	0.53	-1.1
1,516,800	+		Shew_1308	0.53	-0.1
1,516,800	+		Shew_1308	0.53	+0.1
1,516,800	+		Shew_1308	0.53	+0.5
1,516,800	+		Shew_1308	0.53	+0.5
1,516,808	-		Shew_1308	0.53	-0.4
1,516,808	-		Shew_1308	0.53	+0.1
1,516,808	-		Shew_1308	0.53	+0.8
1,516,808	-		Shew_1308	0.53	-0.2
1,516,808	-		Shew_1308	0.53	-0.1
1,516,808	-		Shew_1308	0.53	+0.5
1,516,808	-		Shew_1308	0.53	-0.7
1,516,808	-		Shew_1308	0.53	-0.0
1,516,808	-		Shew_1308	0.53	+0.7
1,516,810	+		Shew_1308	0.54	-0.1
1,516,810	+		Shew_1308	0.54	-0.1
1,516,810	+		Shew_1308	0.54	+0.3
1,516,810	+		Shew_1308	0.54	-0.1
1,516,810	+		Shew_1308	0.54	-1.7
1,516,810	+		Shew_1308	0.54	-0.8
1,516,810	+		Shew_1308	0.54	+0.5
1,516,818	-		Shew_1308	0.54	-0.1
1,516,818	-		Shew_1308	0.54	+0.2
1,516,832	+		Shew_1308	0.55	+0.3
1,516,832	+		Shew_1308	0.55	+0.5
1,516,832	+		Shew_1308	0.55	+0.5
1,516,832	+		Shew_1308	0.55	+0.6
1,516,832	+		Shew_1308	0.55	+0.5
1,516,840	-		Shew_1308	0.56	+1.0
1,516,840	-		Shew_1308	0.56	-0.4
1,516,840	-		Shew_1308	0.56	+1.4
1,516,840	-		Shew_1308	0.56	-0.4
1,516,847	+		Shew_1308	0.57	-0.2
1,516,847	+		Shew_1308	0.57	+0.4
1,516,847	+		Shew_1308	0.57	+0.4
1,516,847	+		Shew_1308	0.57	-0.2
1,516,847	+		Shew_1308	0.57	+0.5
1,516,847	+		Shew_1308	0.57	+0.6
1,516,847	+		Shew_1308	0.57	-0.1
1,516,855	-		Shew_1308	0.57	+1.0
1,516,860	+		Shew_1308	0.58	+0.8
1,516,865	-		Shew_1308	0.58	+0.3
1,516,887	+		Shew_1308	0.60	+0.4
1,516,894	+		Shew_1308	0.60	+0.2
1,516,894	+		Shew_1308	0.60	+0.5
1,516,900	+		Shew_1308	0.61	-0.5
1,516,900	+		Shew_1308	0.61	+0.1
1,516,901	+		Shew_1308	0.61	+0.4
1,516,906	+		Shew_1308	0.61	-0.1
1,516,913	+		Shew_1308	0.62	-0.1
1,516,921	-		Shew_1308	0.63	+0.4
1,516,921	-		Shew_1308	0.63	+0.1
1,516,923	-		Shew_1308	0.63	+0.2
1,516,935	+		Shew_1308	0.64	-1.7
1,516,935	+		Shew_1308	0.64	+0.2
1,516,935	+		Shew_1308	0.64	+0.3
1,516,980	+		Shew_1308	0.67	+0.3
1,516,980	+		Shew_1308	0.67	+0.3
1,516,980	+		Shew_1308	0.67	+0.5
1,516,981	+		Shew_1308	0.67	+0.5
1,516,981	-		Shew_1308	0.67	+0.1
1,516,988	-		Shew_1308	0.68	+1.0
1,516,993	+		Shew_1308	0.68	+0.3
1,516,993	+		Shew_1308	0.68	+0.8
1,516,993	+		Shew_1308	0.68	-0.9
1,516,994	+		Shew_1308	0.68	+0.2
1,516,994	+		Shew_1308	0.68	+1.6
1,516,994	+		Shew_1308	0.68	-0.4
1,516,999	+		Shew_1308	0.69	-0.3
1,516,999	+		Shew_1308	0.69	-0.9
1,516,999	+		Shew_1308	0.69	+0.3
1,516,999	+		Shew_1308	0.69	-1.5
1,516,999	+		Shew_1308	0.69	-0.4
1,516,999	+		Shew_1308	0.69	-1.2
1,517,000	+		Shew_1308	0.69	+0.5
1,517,000	+		Shew_1308	0.69	+0.7
1,517,001	-		Shew_1308	0.69	-0.7
1,517,001	-		Shew_1308	0.69	+0.6
1,517,001	-		Shew_1308	0.69	+0.4
1,517,001	-		Shew_1308	0.69	-0.1
1,517,001	-		Shew_1308	0.69	-0.4
1,517,005	+		Shew_1308	0.69	+0.3
1,517,006	+		Shew_1308	0.69	+0.2
1,517,006	+		Shew_1308	0.69	+0.7
1,517,007	-		Shew_1308	0.70	-0.3
1,517,007	-		Shew_1308	0.70	-0.0
1,517,007	-		Shew_1308	0.70	-0.1
1,517,007	-		Shew_1308	0.70	-0.5
1,517,008	-		Shew_1308	0.70	+0.1
1,517,012	-		Shew_1308	0.70	+0.9
1,517,026	+		Shew_1308	0.71	-0.6
1,517,028	+		Shew_1308	0.71	+0.3
1,517,036	-		Shew_1308	0.72	-0.1
1,517,041	+		Shew_1308	0.72	+0.1
1,517,041	+		Shew_1308	0.72	+0.3
1,517,042	+		Shew_1308	0.72	+0.6
1,517,043	-		Shew_1308	0.72	-1.2
1,517,049	-		Shew_1308	0.73	+0.3
1,517,049	-		Shew_1308	0.73	+0.5
1,517,049	-		Shew_1308	0.73	+0.6
1,517,049	-		Shew_1308	0.73	-0.3
1,517,049	-		Shew_1308	0.73	-0.8
1,517,059	+		Shew_1308	0.74	+0.7
1,517,115	+		Shew_1308	0.78	+0.1
1,517,115	+		Shew_1308	0.78	+1.5
1,517,127	+		Shew_1308	0.79	-0.0
1,517,127	+		Shew_1308	0.79	+0.3
1,517,146	-		Shew_1308	0.81	+1.0
1,517,187	+		Shew_1308	0.84	-0.9
1,517,212	+		Shew_1308	0.86	+0.9
1,517,241	+		Shew_1308	0.88	+0.8
1,517,252	+		Shew_1308	0.89	+0.2
1,517,253	+		Shew_1308	0.89	+0.2
1,517,265	+				-0.4
1,517,275	-				+0.9
1,517,275	-				-0.0
1,517,277	-				+0.3
1,517,319	-				+0.4
1,517,330	+				-1.3
1,517,332	+				-0.5
1,517,332	+				-0.4
1,517,340	-				+0.3
1,517,340	-				+0.2
1,517,340	-				+1.5
1,517,340	-				+0.0
1,517,354	+				+0.5
1,517,354	+				-0.0
1,517,386	-				+0.7
1,517,386	-				+0.5
1,517,386	-				+0.4
1,517,386	-				-1.3
1,517,386	-				+0.4
1,517,386	-				+0.5
1,517,386	-				+0.5
1,517,386	-				-1.1
1,517,391	-				+0.3
1,517,395	-				-0.1
1,517,430	+				-1.1
1,517,430	+				+0.6
1,517,430	+				-0.2
1,517,430	+				+0.6
1,517,438	-		Shew_1309	0.11	+0.6
1,517,443	-		Shew_1309	0.13	+0.1
1,517,443	+		Shew_1309	0.13	+0.2
1,517,443	+		Shew_1309	0.13	+0.4
1,517,451	-		Shew_1309	0.18	+0.0
1,517,455	+		Shew_1309	0.20	+1.0
1,517,455	+		Shew_1309	0.20	+0.5
1,517,498	-		Shew_1309	0.43	-0.4
1,517,500	+		Shew_1309	0.44	+0.2
1,517,500	+		Shew_1309	0.44	-0.1
1,517,503	-		Shew_1309	0.46	+0.6
1,517,503	-		Shew_1309	0.46	+0.8
1,517,503	-		Shew_1309	0.46	+0.3
1,517,503	-		Shew_1309	0.46	-0.2
1,517,503	-		Shew_1309	0.46	+0.6
1,517,503	-		Shew_1309	0.46	+0.7
1,517,503	-		Shew_1309	0.46	+1.2
1,517,503	-		Shew_1309	0.46	+0.1
1,517,529	-		Shew_1309	0.60	+0.4
1,517,542	-		Shew_1309	0.67	+0.1
1,517,542	-		Shew_1309	0.67	-0.0
1,517,552	-		Shew_1309	0.72	-0.1
1,517,569	+		Shew_1309	0.81	+0.3
1,517,570	+		Shew_1309	0.82	-0.0
1,517,578	-		Shew_1309	0.86	+0.5
1,517,579	+		Shew_1309	0.87	+0.4
1,517,579	+		Shew_1309	0.87	+0.3
1,517,579	+		Shew_1309	0.87	+0.5
1,517,579	+		Shew_1309	0.87	+0.6
1,517,579	+		Shew_1309	0.87	-0.2
1,517,579	+		Shew_1309	0.87	-1.0
1,517,580	+		Shew_1309	0.87	-0.3
1,517,586	+				+0.1
1,517,586	+				-0.5
1,517,586	+				-0.5
1,517,587	-				-0.2
1,517,587	-				-0.7
1,517,587	-				+0.4
1,517,587	-				-0.5
1,517,587	-				-0.0
1,517,587	-				+0.2
1,517,587	-				+0.8
1,517,587	-				-0.0
1,517,587	-				-1.2
1,517,588	-				+0.2
1,517,588	-				+0.1
1,517,589	-				+0.3
1,517,591	+				-1.1
1,517,591	+				+0.1
1,517,591	+				+0.2
1,517,591	+				+0.2
1,517,591	+				-0.6
1,517,591	+				+0.3
1,517,591	+				-0.8
1,517,591	+				-1.5
1,517,591	+				+0.6
1,517,591	+				+0.1
1,517,591	+				-0.3
1,517,591	+				+0.2
1,517,591	+				+0.7
1,517,591	+				+0.4
1,517,591	+				+0.1
1,517,591	+				+2.3
1,517,591	+				+0.3
1,517,591	+				-0.1
1,517,591	+				+0.9
1,517,591	+				+0.3
1,517,591	+				-0.2
1,517,594	-				-2.0
1,517,594	-				+0.4
1,517,594	-				+0.5
1,517,599	-				-0.5
1,517,599	-				+1.6
1,517,599	-				-0.2
1,517,599	-				+0.8
1,517,599	-				+0.5
1,517,599	-				+0.7
1,517,599	-				+0.2
1,517,599	-				-1.3
1,517,599	-				+0.4
1,517,599	-				+0.9
1,517,599	-				+0.7
1,517,599	-				+1.4
1,517,599	-				+0.3
1,517,599	-				-0.2
1,517,599	-				-0.2
1,517,599	-				-0.9
1,517,599	-				+1.1
1,517,599	-				+0.1
1,517,599	-				-0.6
1,517,599	-				+0.6
1,517,599	-				-0.8
1,517,599	-				+0.9
1,517,612	+				+0.5
1,517,713	+				+0.2
1,517,722	-				+0.4
1,517,842	+				-1.3
1,517,843	+				-0.2
1,517,850	-				+0.1
1,517,852	+				-0.2
1,517,859	+				-0.4
1,517,861	-				-0.5
1,517,874	+				-0.1
1,517,874	+				+1.0
1,517,875	+				+0.5
1,517,879	+				-0.1
1,517,889	+				+0.2
1,517,896	+				+0.5
1,517,896	+				+0.2
1,517,897	-				+0.4
1,517,900	+				+0.3
1,517,904	+				-0.4
1,517,916	+				+0.2
1,517,916	+				+0.3
1,517,924	-				+0.9
1,517,924	-				+0.3
1,517,924	-				-0.2
1,517,925	+				+0.6
1,517,926	-				-1.0
1,517,933	-				+0.3
1,518,034	+				+0.8
1,518,044	-				+0.3
1,518,057	-				-0.4
1,518,061	+				+0.8
1,518,094	+				+0.2
1,518,102	-				+0.3
1,518,162	+				-0.5
1,518,162	+				+0.6
1,518,162	+				-0.7
1,518,162	+				-0.1
1,518,170	-				-0.5
1,518,170	-				+0.1
1,518,170	-				+0.1
1,518,170	-				+0.7
1,518,170	-				+0.1
1,518,170	-				+0.5
1,518,170	-				+0.5
1,518,170	-				+0.7
1,518,327	+				-0.1
1,518,327	+				+0.4
1,518,335	-				+0.3
1,518,476	-				-2.7