Strain Fitness in Shewanella loihica PV-4 around Shew_0918

Experiment: 1-ethyl-3-methylimidazolium acetate 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0917 and Shew_0918 are separated by 158 nucleotidesShew_0918 and Shew_0919 are separated by 278 nucleotides Shew_0917: Shew_0917 - LysR family transcriptional regulator (RefSeq), at 1,036,479 to 1,037,444 _0917 Shew_0918: Shew_0918 - decaheme cytochrome c (RefSeq), at 1,037,603 to 1,039,897 _0918 Shew_0919: Shew_0919 - diguanylate phosphodiesterase (RefSeq), at 1,040,176 to 1,042,299 _0919 Position (kb) 1037 1038 1039 1040Strain fitness (log2 ratio) -1 0 1at 1036.833 kb on - strand, within Shew_0917at 1036.991 kb on - strand, within Shew_0917at 1037.261 kb on - strand, within Shew_0917at 1037.960 kb on + strand, within Shew_0918at 1037.960 kb on + strand, within Shew_0918at 1037.960 kb on + strand, within Shew_0918at 1037.968 kb on - strand, within Shew_0918at 1038.111 kb on + strand, within Shew_0918at 1038.189 kb on + strand, within Shew_0918at 1038.421 kb on + strand, within Shew_0918at 1038.641 kb on + strand, within Shew_0918at 1038.658 kb on - strand, within Shew_0918at 1038.959 kb on - strand, within Shew_0918at 1039.138 kb on + strand, within Shew_0918at 1039.252 kb on + strand, within Shew_0918at 1040.330 kb on + strandat 1040.470 kb on + strand, within Shew_0919

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 10 mM
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1,036,833 - Shew_0917 0.37 +0.4
1,036,991 - Shew_0917 0.53 -0.0
1,037,261 - Shew_0917 0.81 -0.2
1,037,960 + Shew_0918 0.16 +0.4
1,037,960 + Shew_0918 0.16 -0.0
1,037,960 + Shew_0918 0.16 +1.3
1,037,968 - Shew_0918 0.16 +0.4
1,038,111 + Shew_0918 0.22 -1.1
1,038,189 + Shew_0918 0.26 +0.4
1,038,421 + Shew_0918 0.36 +0.4
1,038,641 + Shew_0918 0.45 +0.6
1,038,658 - Shew_0918 0.46 -0.1
1,038,959 - Shew_0918 0.59 +0.3
1,039,138 + Shew_0918 0.67 +0.4
1,039,252 + Shew_0918 0.72 +0.4
1,040,330 + +0.6
1,040,470 + Shew_0919 0.14 -0.1

Or see this region's nucleotide sequence