Strain Fitness in Shewanella loihica PV-4 around Shew_0849

Experiment: 1-ethyl-3-methylimidazolium acetate 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0847 and Shew_0848 are separated by 119 nucleotidesShew_0848 and Shew_0849 are separated by 92 nucleotidesShew_0849 and Shew_0850 are separated by 184 nucleotides Shew_0847: Shew_0847 - Rh family protein/ammonium transporter (RefSeq), at 969,735 to 970,985 _0847 Shew_0848: Shew_0848 - hypothetical protein (RefSeq), at 971,105 to 971,431 _0848 Shew_0849: Shew_0849 - TPR repeat-containing protein (RefSeq), at 971,524 to 972,705 _0849 Shew_0850: Shew_0850 - hypothetical protein (RefSeq), at 972,890 to 973,717 _0850 Position (kb) 971 972 973Strain fitness (log2 ratio) -3 -2 -1 0 1at 970.704 kb on - strand, within Shew_0847at 970.805 kb on + strand, within Shew_0847at 971.095 kb on - strandat 971.299 kb on - strand, within Shew_0848at 971.501 kb on + strandat 971.509 kb on - strandat 971.795 kb on - strand, within Shew_0849at 971.857 kb on - strand, within Shew_0849at 971.984 kb on - strand, within Shew_0849at 972.189 kb on + strand, within Shew_0849at 972.189 kb on + strand, within Shew_0849at 972.197 kb on - strand, within Shew_0849at 972.197 kb on - strand, within Shew_0849at 972.200 kb on + strand, within Shew_0849at 972.261 kb on + strand, within Shew_0849at 972.267 kb on - strand, within Shew_0849at 972.310 kb on - strand, within Shew_0849at 972.356 kb on - strand, within Shew_0849at 972.383 kb on + strand, within Shew_0849at 972.383 kb on + strand, within Shew_0849at 972.383 kb on + strand, within Shew_0849at 972.391 kb on - strand, within Shew_0849at 972.391 kb on - strand, within Shew_0849at 972.413 kb on + strand, within Shew_0849at 972.506 kb on + strand, within Shew_0849at 972.530 kb on - strand, within Shew_0849at 972.559 kb on - strand, within Shew_0849at 972.561 kb on + strand, within Shew_0849at 972.569 kb on - strand, within Shew_0849at 972.569 kb on - strand, within Shew_0849at 972.596 kb on + strandat 972.596 kb on + strandat 972.596 kb on + strandat 972.604 kb on - strandat 972.604 kb on - strandat 972.676 kb on - strandat 972.692 kb on - strandat 972.802 kb on - strandat 972.817 kb on + strandat 972.826 kb on - strandat 972.873 kb on + strandat 972.881 kb on - strandat 972.901 kb on - strandat 972.936 kb on + strandat 972.936 kb on + strandat 972.936 kb on + strandat 972.936 kb on + strandat 972.936 kb on + strandat 972.936 kb on + strandat 972.936 kb on + strandat 972.944 kb on - strandat 972.944 kb on - strandat 972.944 kb on - strandat 972.944 kb on - strandat 972.944 kb on - strandat 972.944 kb on - strandat 972.944 kb on - strandat 972.944 kb on - strandat 972.974 kb on - strand, within Shew_0850at 973.051 kb on - strand, within Shew_0850at 973.070 kb on - strand, within Shew_0850at 973.086 kb on + strand, within Shew_0850at 973.089 kb on - strand, within Shew_0850at 973.387 kb on + strand, within Shew_0850at 973.458 kb on + strand, within Shew_0850at 973.544 kb on - strand, within Shew_0850at 973.552 kb on - strand, within Shew_0850

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 10 mM
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970,704 - Shew_0847 0.77 +0.1
970,805 + Shew_0847 0.86 +0.1
971,095 - -0.9
971,299 - Shew_0848 0.59 -0.3
971,501 + -0.9
971,509 - -0.9
971,795 - Shew_0849 0.23 -0.0
971,857 - Shew_0849 0.28 -0.7
971,984 - Shew_0849 0.39 +0.3
972,189 + Shew_0849 0.56 +0.4
972,189 + Shew_0849 0.56 +0.2
972,197 - Shew_0849 0.57 +0.3
972,197 - Shew_0849 0.57 +0.6
972,200 + Shew_0849 0.57 +0.1
972,261 + Shew_0849 0.62 +0.8
972,267 - Shew_0849 0.63 +0.4
972,310 - Shew_0849 0.66 +0.1
972,356 - Shew_0849 0.70 -0.4
972,383 + Shew_0849 0.73 -3.2
972,383 + Shew_0849 0.73 +0.4
972,383 + Shew_0849 0.73 +0.7
972,391 - Shew_0849 0.73 +0.5
972,391 - Shew_0849 0.73 +0.3
972,413 + Shew_0849 0.75 -0.3
972,506 + Shew_0849 0.83 -0.8
972,530 - Shew_0849 0.85 +0.1
972,559 - Shew_0849 0.88 +1.1
972,561 + Shew_0849 0.88 +0.5
972,569 - Shew_0849 0.88 +0.3
972,569 - Shew_0849 0.88 +0.1
972,596 + +0.3
972,596 + -0.3
972,596 + +0.1
972,604 - +0.2
972,604 - +0.3
972,676 - +0.2
972,692 - +0.0
972,802 - +0.3
972,817 + -0.2
972,826 - +0.3
972,873 + -0.2
972,881 - +0.5
972,901 - +0.3
972,936 + -1.6
972,936 + +0.3
972,936 + +1.0
972,936 + +0.4
972,936 + +0.4
972,936 + -1.4
972,936 + -0.8
972,944 - +0.1
972,944 - +0.2
972,944 - +0.1
972,944 - +0.5
972,944 - +1.0
972,944 - +0.7
972,944 - +0.4
972,944 - -1.3
972,974 - Shew_0850 0.10 +0.4
973,051 - Shew_0850 0.19 -0.0
973,070 - Shew_0850 0.22 +0.4
973,086 + Shew_0850 0.24 -0.6
973,089 - Shew_0850 0.24 +0.3
973,387 + Shew_0850 0.60 +0.2
973,458 + Shew_0850 0.69 -0.7
973,544 - Shew_0850 0.79 +0.4
973,552 - Shew_0850 0.80 -0.3

Or see this region's nucleotide sequence