Experiment: 1-ethyl-3-methylimidazolium acetate 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0806 and Shew_0807 are separated by 748 nucleotides Shew_0807 and Shew_0808 are separated by 305 nucleotides
Shew_0806: Shew_0806 - MltA-interacting MipA family protein (RefSeq), at 918,384 to 919,229
_0806
Shew_0807: Shew_0807 - peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq), at 919,978 to 925,095
_0807
Shew_0808: Shew_0808 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 925,401 to 927,065
_0808
Position (kb) 919
920
921
922
923
924
925
926 Strain fitness (log2 ratio) -2
-1
0
1 at 918.985 kb on + strand, within Shew_0806 at 919.075 kb on + strand, within Shew_0806 at 919.083 kb on + strand, within Shew_0806 at 919.230 kb on - strand at 919.355 kb on - strand at 919.620 kb on + strand at 919.966 kb on + strand at 920.029 kb on + strand at 920.140 kb on - strand at 920.140 kb on - strand at 920.312 kb on + strand at 920.422 kb on - strand at 920.574 kb on + strand, within Shew_0807 at 920.585 kb on + strand, within Shew_0807 at 920.585 kb on + strand, within Shew_0807 at 920.585 kb on + strand, within Shew_0807 at 921.035 kb on + strand, within Shew_0807 at 921.038 kb on + strand, within Shew_0807 at 921.507 kb on + strand, within Shew_0807 at 921.537 kb on - strand, within Shew_0807 at 921.722 kb on + strand, within Shew_0807 at 921.753 kb on + strand, within Shew_0807 at 921.911 kb on + strand, within Shew_0807 at 921.911 kb on + strand, within Shew_0807 at 921.919 kb on - strand, within Shew_0807 at 922.274 kb on - strand, within Shew_0807 at 922.519 kb on - strand, within Shew_0807 at 922.666 kb on - strand, within Shew_0807 at 922.748 kb on - strand, within Shew_0807 at 923.037 kb on - strand, within Shew_0807 at 923.137 kb on + strand, within Shew_0807 at 923.145 kb on - strand, within Shew_0807 at 923.313 kb on + strand, within Shew_0807 at 923.375 kb on + strand, within Shew_0807 at 923.488 kb on + strand, within Shew_0807 at 923.661 kb on + strand, within Shew_0807 at 923.960 kb on - strand, within Shew_0807 at 923.960 kb on - strand, within Shew_0807 at 924.436 kb on + strand, within Shew_0807 at 924.466 kb on - strand, within Shew_0807 at 924.550 kb on - strand, within Shew_0807 at 924.601 kb on + strand at 924.601 kb on + strand at 924.893 kb on + strand at 924.981 kb on + strand at 925.094 kb on + strand at 925.102 kb on - strand at 925.102 kb on - strand at 925.541 kb on + strand at 925.565 kb on + strand at 925.573 kb on - strand, within Shew_0808 at 925.971 kb on - strand, within Shew_0808
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 10 mM remove 918,985 + Shew_0806 0.71 +0.6 919,075 + Shew_0806 0.82 +0.4 919,083 + Shew_0806 0.83 +0.1 919,230 - +0.8 919,355 - +0.2 919,620 + -0.1 919,966 + +0.8 920,029 + -2.1 920,140 - -0.5 920,140 - -0.3 920,312 + +0.6 920,422 - +0.5 920,574 + Shew_0807 0.12 +0.3 920,585 + Shew_0807 0.12 +0.7 920,585 + Shew_0807 0.12 +0.1 920,585 + Shew_0807 0.12 -0.3 921,035 + Shew_0807 0.21 +0.0 921,038 + Shew_0807 0.21 +0.1 921,507 + Shew_0807 0.30 -0.1 921,537 - Shew_0807 0.30 +0.4 921,722 + Shew_0807 0.34 -2.1 921,753 + Shew_0807 0.35 +0.5 921,911 + Shew_0807 0.38 +0.1 921,911 + Shew_0807 0.38 +0.9 921,919 - Shew_0807 0.38 -0.1 922,274 - Shew_0807 0.45 -1.0 922,519 - Shew_0807 0.50 +0.1 922,666 - Shew_0807 0.53 +0.1 922,748 - Shew_0807 0.54 +0.3 923,037 - Shew_0807 0.60 -0.2 923,137 + Shew_0807 0.62 +0.3 923,145 - Shew_0807 0.62 -0.3 923,313 + Shew_0807 0.65 +0.3 923,375 + Shew_0807 0.66 +0.1 923,488 + Shew_0807 0.69 -0.7 923,661 + Shew_0807 0.72 -2.3 923,960 - Shew_0807 0.78 +0.1 923,960 - Shew_0807 0.78 -0.2 924,436 + Shew_0807 0.87 -0.5 924,466 - Shew_0807 0.88 +0.1 924,550 - Shew_0807 0.89 -2.0 924,601 + +0.1 924,601 + -1.2 924,893 + -0.4 924,981 + -0.2 925,094 + +0.2 925,102 - +0.6 925,102 - -0.7 925,541 + +0.2 925,565 + -0.6 925,573 - Shew_0808 0.10 -0.9 925,971 - Shew_0808 0.34 +0.0
Or see this region's nucleotide sequence